View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_13 (Length: 490)
Name: NF3223_high_13
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 165 - 472
Target Start/End: Complemental strand, 42205928 - 42205624
Alignment:
| Q |
165 |
ccccatgccccaaattattcaaattgaaatgctagtatgagagaaacatagagaataggggtagagatttcatgattgtggaccccttaatatatggtct |
264 |
Q |
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| T |
42205928 |
ccccatgccccaaattattcaaattgaaatgctagtatgagagaaacatagagaataggggtagagatttcatgattgtggaccccttaatatatggtct |
42205829 |
T |
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| Q |
265 |
acaagtgtaacatcataggaacttttgtccttaatgcatggcacacgtgcattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaa |
364 |
Q |
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| T |
42205828 |
acaagtgtaacatcataggaacttttgtccttaatgcatggcacacgtgcattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaa |
42205729 |
T |
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| Q |
365 |
tcaccaataataataatgcaaattgattgaaccataaacatgatttattgacataatgaaaatctaatcaataagctatagtaatcataggtccctccct |
464 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
42205728 |
tcaccaataa---taatgcaaattgattgaaccataaacatgatttattgacataatgaaaatctaatcaataagctatagcaatcatagatccctccct |
42205632 |
T |
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| Q |
465 |
agccatcc |
472 |
Q |
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|||||||| |
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| T |
42205631 |
agccatcc |
42205624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 42206803 - 42206698
Alignment:
| Q |
14 |
agataaaagttgattttcaatttcattacatgactggatttttatgaaattaataactatttttccataaaatatgtagtatttattttgatttactact |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206803 |
agataaaagtagattttcaatttcattacatgactggatttttatgaaattaataactatttttccataaaatatgtagtatttattttgatttactact |
42206704 |
T |
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| Q |
114 |
agctct |
119 |
Q |
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|||||| |
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| T |
42206703 |
agctct |
42206698 |
T |
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