View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_133 (Length: 237)
Name: NF3223_high_133
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_133 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11157728 - 11157845
Alignment:
| Q |
1 |
ttatgatgattctggtgatgataatgggaataggagaacaaggaagccagtgaaagaaaggtccctaaaatccttaatgtgagaagggatatttatatag |
100 |
Q |
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| T |
11157728 |
ttatgatgattctggtgatgataatgggaataggagaacaaggaagccagtgaaagaaaggtccctaaaatccttaatgtgagaagggatatttatatag |
11157827 |
T |
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| Q |
101 |
ggttggggttcaattcaa |
118 |
Q |
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| T |
11157828 |
ggttggggttcaattcaa |
11157845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11164817 - 11164926
Alignment:
| Q |
1 |
ttatgatgattctggtgatgataatgggaataggagaacaaggaagccagtgaaagaaaggtccctaaaatccttaatgtgagaagggatatttatatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164817 |
ttatgatgattctggtgatgataatgggaataggagaacaaggaagccagtgaaagaaaggtccctaaaatccttaatgtgagaagggatatttatatag |
11164916 |
T |
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| Q |
101 |
ggttggggtt |
110 |
Q |
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| T |
11164917 |
ggttggggtt |
11164926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 4703390 - 4703324
Alignment:
| Q |
16 |
tgatgataatgggaataggagaacaaggaagccagtgaaagaaaggtccctaaaatccttaatgtga |
82 |
Q |
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| T |
4703390 |
tgatgataatgggaagaggagaatgaggaaacccgtgaaagaaaggtcactaaaatcgttaatgtga |
4703324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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