View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_135 (Length: 237)
Name: NF3223_high_135
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_135 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 102920 - 102702
Alignment:
| Q |
1 |
ttcaatctcaaatttcaccggtaattaagtagcaaaagaagcaatggtagatagatagcacatacttggtgacagtaaatgtaacgaagaatctctttgc |
100 |
Q |
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| T |
102920 |
ttcaatatcaaatttcacgggtaattaagtagcaaaagaagcaatggtagatagatagcacatacttggtgacagtaaatgtaacgaagaatctctttgc |
102821 |
T |
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| Q |
101 |
gatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaatgtagaaaattaattaatattgattacaatgattagcgt |
200 |
Q |
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| T |
102820 |
gatgttctcgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaatgtagaaaattaattaatattgattacaatgattagcgt |
102721 |
T |
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| Q |
201 |
ttaaacaaggcaggcaggt |
219 |
Q |
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| T |
102720 |
ttaaacaaggcaggcaggt |
102702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 161968 - 161848
Alignment:
| Q |
54 |
gatagcacatacttggtgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaa |
153 |
Q |
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| T |
161968 |
gataacacctacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaaa |
161869 |
T |
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| Q |
154 |
acctgcaatgtagaaaattaat |
175 |
Q |
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| T |
161868 |
acctacaa-gtaggaaattaat |
161848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 93577 - 93690
Alignment:
| Q |
62 |
atacttggtgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaa |
161 |
Q |
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| T |
93577 |
atacctggtgacaatatatgtaacgaagaatctctttacgatgttccggtgggaatacagaatcaagatgtccagtaatgtagagacaaaaaacctgcaa |
93676 |
T |
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| Q |
162 |
tgtagaaaattaat |
175 |
Q |
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| T |
93677 |
tataaaaaattaat |
93690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 13051722 - 13051630
Alignment:
| Q |
70 |
tgacagtaaatgtaacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgcaat |
162 |
Q |
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| T |
13051722 |
tgacaatatatgtaatgaagaatctctttgcaatgctcttgtgggaataccaaatcaagatgtcccgtaatgtaaacacaaaaaacctgcaat |
13051630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 12138439 - 12138517
Alignment:
| Q |
82 |
taacgaagaatctctttgcgatgttcttgtgggaagacggaatcaagatgtccagtaatgtagacacagaaaacctgca |
160 |
Q |
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| T |
12138439 |
taacgaagaatctccttacgatgctcttttgagaatatagaatcaagatgtcctgtaatgtacatacagaaaacctgca |
12138517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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