View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_137 (Length: 237)
Name: NF3223_high_137
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_137 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27100732 - 27100967
Alignment:
| Q |
1 |
caggttacccaccatttatattcatgcaccaaacaaaatagtcttgggcatgttttgaagaaaccaagtcccaccgttaaaacctaatataccacttcct |
100 |
Q |
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| T |
27100732 |
caggttacccaccatttatattcatgcaccaaacaatatagtcttgggcatgttttgaagaaac-aagtcccaccgttaaaacctaatataccacttcct |
27100830 |
T |
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| Q |
101 |
caaaattgtgttcccttaaacaattgttaaagctaaatgacttggccccctattatttttaaatatccttttcacctagccactcgcctgcaacatttca |
200 |
Q |
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| T |
27100831 |
caaaattgtgttcccttaaacaattgttaaagctaaatgacttggccccctattatttttaaatatccttttcacccagccactcgcctgcaacatttca |
27100930 |
T |
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| Q |
201 |
gtactatatcgctccctcaatcaacaagaacctacct |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
27100931 |
gtactatatcgctccctcaatcaacaaaaacctacct |
27100967 |
T |
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