View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_14 (Length: 488)
Name: NF3223_high_14
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 33962928 - 33962466
Alignment:
| Q |
11 |
cacagaccgagggacactaaaaccaaacccctgaacaagacctgcacctctcagacagcaaaacacagacacctttcatgccccattacattcgaatgca |
110 |
Q |
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| T |
33962928 |
cacagaccgagggacactaaaaccaaacccctgaacaagacctgcacctctcagacagcaaaacacagacacctttcatgccccattacattcgaatgca |
33962829 |
T |
|
| Q |
111 |
atctcccgggtcccaacaccactcatagaagaagcaaggggaacactttagtcaagtcaaactccacctccaagacaataccttattatcctcggccata |
210 |
Q |
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| T |
33962828 |
atctcccgggtcccaacaccactcatagaagaagcaaggggaacactttagtcaagtcaaactccacctccaagacaataccttattatcctcggccata |
33962729 |
T |
|
| Q |
211 |
acatcactctctttcacaacattgttgaacatcctttcattcccactcctccatatcactcaaactgtcgcatgccaaataagcataagaccatgcctca |
310 |
Q |
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| T |
33962728 |
acatcactctctttcacaacattgttgaacatcctttcattcccactcctccatatcactcaaactgtcgcatgccaaataagcataagaccatgcctca |
33962629 |
T |
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| Q |
311 |
ttcttttattgttagcctctcttctccaacattccaactgcctaaataaattaaatggagtaataaaattaatttcaatccaaaatcaccctccacacct |
410 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33962628 |
ttctcttattgttagcctctcttctccaacattccaactgcctaaataaattaaatggagtaataaaattaatttcaatccaaaatcaccctccacacct |
33962529 |
T |
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| Q |
411 |
ttgatatgaattggcaatgtaagaataaatgagactatgtttccacaaattcatcacaaaaaa |
473 |
Q |
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| T |
33962528 |
ttgatatgacttggcaatgtaagaataaatgagactatgtttccacaaattcatcacaaaaaa |
33962466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 29611622 - 29611544
Alignment:
| Q |
109 |
caatctcccgggtcccaacaccactcatagaagaagcaaggggaacactttagtcaagtcaaactccacctccaagaca |
187 |
Q |
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| T |
29611622 |
caatcgccggggtcccaacaccattcataataaaagcaaggcggacactttaatctagtcaaactccatctccacgaca |
29611544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 29949202 - 29949133
Alignment:
| Q |
118 |
gggtcccaacaccactcatagaagaagcaaggggaacactttagtcaagtcaaactccacctccaagaca |
187 |
Q |
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| T |
29949202 |
gggtcccaacaccattcataataaaagcaaggcggacactttaatctagtcaaactccatctccacgaca |
29949133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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