View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_148 (Length: 227)
Name: NF3223_high_148
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_148 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 55180577 - 55180737
Alignment:
| Q |
7 |
atgttgtatcgtatcaaattactatcacgttaggtaccatatattctattgtactagtttgaattttaccttatccgttactccaaaaatacattctatc |
106 |
Q |
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| T |
55180577 |
atgttgtatcgtatcaagttactatcacgttaggtaccatatattttgttgtactagtttgaattttaccttgtccgttactccaaaaatacattctatc |
55180676 |
T |
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| Q |
107 |
acaaatatattatttttaagaaaagnnnnnnngcatgtagaaacaaacatatatcatttca |
167 |
Q |
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| T |
55180677 |
acaaatatattatttttaagaaaagaaaaaaagcatgtagaaacaaacatatatcatttca |
55180737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 55180736 - 55180774
Alignment:
| Q |
189 |
cagggcagggcagggcagtaataggcgaaagtctaagtt |
227 |
Q |
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| T |
55180736 |
cagggcagggcagggcagtaaaaggcgaaagtctaagtt |
55180774 |
T |
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