View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_149 (Length: 227)

Name: NF3223_high_149
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_149
NF3223_high_149
[»] chr3 (5 HSPs)
chr3 (7-120)||(6789690-6789802)
chr3 (7-120)||(17402830-17402944)
chr3 (7-120)||(1140071-1140184)
chr3 (186-227)||(6789583-6789624)
chr3 (199-227)||(17403025-17403053)
[»] chr6 (17 HSPs)
chr6 (7-120)||(5376947-5377061)
chr6 (7-120)||(5378802-5378916)
chr6 (8-120)||(19645349-19645461)
chr6 (6-119)||(1088700-1088813)
chr6 (29-88)||(15149108-15149167)
chr6 (6-53)||(9415205-9415252)
chr6 (7-88)||(8915570-8915651)
chr6 (7-88)||(20985856-20985937)
chr6 (68-120)||(15868462-15868514)
chr6 (68-120)||(15866650-15866702)
chr6 (68-120)||(33866169-33866221)
chr6 (185-227)||(19645526-19645568)
chr6 (7-52)||(24544757-24544802)
chr6 (68-117)||(33869319-33869368)
chr6 (182-221)||(9414988-9415027)
chr6 (182-221)||(15149268-15149307)
chr6 (199-227)||(5378693-5378721)
[»] chr7 (16 HSPs)
chr7 (7-120)||(20046543-20046658)
chr7 (7-120)||(44963233-44963346)
chr7 (7-74)||(28014321-28014388)
chr7 (6-120)||(4895654-4895768)
chr7 (68-120)||(37405559-37405611)
chr7 (22-74)||(25471834-25471886)
chr7 (68-120)||(28124697-28124749)
chr7 (68-120)||(28126524-28126576)
chr7 (7-66)||(8405631-8405690)
chr7 (182-227)||(44963126-44963171)
chr7 (182-227)||(44962246-44962291)
chr7 (199-227)||(20046739-20046767)
chr7 (7-39)||(28124635-28124667)
chr7 (199-227)||(28124830-28124858)
chr7 (7-39)||(28126462-28126494)
chr7 (199-227)||(28126657-28126685)
[»] chr8 (16 HSPs)
chr8 (7-120)||(30224300-30224413)
chr8 (7-120)||(5567496-5567609)
chr8 (7-120)||(25249076-25249189)
chr8 (7-120)||(31032052-31032164)
chr8 (16-120)||(3379172-3379275)
chr8 (6-120)||(6428810-6428925)
chr8 (41-120)||(3375506-3375584)
chr8 (51-120)||(36535924-36535993)
chr8 (8-66)||(19473656-19473713)
chr8 (8-66)||(19544581-19544638)
chr8 (8-66)||(19588058-19588115)
chr8 (182-227)||(30224193-30224238)
chr8 (182-227)||(5567389-5567434)
chr8 (182-227)||(31032222-31032267)
chr8 (7-74)||(14939631-14939697)
chr8 (182-227)||(3375646-3375691)
[»] chr4 (19 HSPs)
chr4 (7-120)||(7040431-7040544)
chr4 (7-120)||(23564723-23564836)
chr4 (7-120)||(18656178-18656291)
chr4 (7-120)||(54296498-54296611)
chr4 (7-75)||(52545151-52545218)
chr4 (7-74)||(56074694-56074761)
chr4 (59-120)||(23566449-23566510)
chr4 (18-119)||(23985845-23985946)
chr4 (63-120)||(3529251-3529308)
chr4 (7-120)||(52520671-52520785)
chr4 (182-227)||(7040324-7040369)
chr4 (182-227)||(18656071-18656116)
chr4 (182-227)||(23564898-23564943)
chr4 (7-90)||(18395691-18395774)
chr4 (7-39)||(52518911-52518943)
chr4 (182-221)||(3274663-3274702)
chr4 (199-227)||(52518720-52518748)
chr4 (68-120)||(52518829-52518881)
chr4 (199-227)||(52520562-52520590)
[»] chr2 (5 HSPs)
chr2 (7-120)||(29758190-29758303)
chr2 (10-102)||(8759115-8759207)
chr2 (7-90)||(18612088-18612172)
chr2 (182-227)||(8759206-8759251)
chr2 (182-227)||(29758083-29758128)
[»] chr1 (10 HSPs)
chr1 (10-120)||(17449381-17449490)
chr1 (18-120)||(9312099-9312202)
chr1 (8-120)||(48941670-48941786)
chr1 (68-120)||(3282871-3282923)
chr1 (68-120)||(3284572-3284624)
chr1 (7-74)||(5924834-5924900)
chr1 (182-227)||(48940639-48940684)
chr1 (68-120)||(9310482-9310534)
chr1 (68-120)||(16808688-16808740)
chr1 (199-227)||(16808821-16808849)
[»] scaffold0057 (1 HSPs)
scaffold0057 (7-120)||(58856-58968)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-74)||(39260-39325)
[»] chr5 (4 HSPs)
chr5 (17-116)||(25076173-25076273)
chr5 (17-116)||(25134142-25134242)
chr5 (7-66)||(20012971-20013029)
chr5 (68-120)||(39787168-39787220)
[»] scaffold0251 (1 HSPs)
scaffold0251 (68-120)||(6296-6348)
[»] scaffold0189 (1 HSPs)
scaffold0189 (7-73)||(19063-19128)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 6789802 - 6789690
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  6789802 cataagagtactcatgtgggagatactcatagaaactcattgtagaa-tgaatagattgaaaaaagatagtgaatgagtacaatagtattcctatatata 6789704  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  6789703 gagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 17402830 - 17402944
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatat- 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||     
T  17402830 cataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatata 17402929  T
Q  106 agagattagtttgag 120  Q
    |||||||||||||||    
T  17402930 agagattagtttgag 17402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 1140184 - 1140071
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||    
T  1140184 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatata 1140085  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  1140084 gagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 6789624 - 6789583
Alignment:
Q  186 tgattactaactatagtctaactaccttaactaactacacat 227  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  6789624 tgattaccaactctagtctaactaccttaactaactacacat 6789583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 17403025 - 17403053
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  17403025 tagtctaactaccttaactaactacacat 17403053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 5377061 - 5376947
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatat- 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||     
T  5377061 cataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatata 5376962  T
Q  106 agagattagtttgag 120  Q
    |||||||||||||||    
T  5376961 agagattagtttgag 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 5378916 - 5378802
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatat- 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||     
T  5378916 cataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatata 5378817  T
Q  106 agagattagtttgag 120  Q
    |||||||||||||||    
T  5378816 agagattagtttgag 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 19645349 - 19645461
Alignment:
Q  8 ataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatag 107  Q
    ||||||| ||||||| |||||||||||| ||||| ||||||||||||| |||||||||| |||||||| |||||||||||||| || ||| |||||||||    
T  19645349 ataagagtactcatgagggagatactcaaagaaattcattgtagaaataaatagattgataaaagataatgaatgagtacaatagtgttcttatatatag 19645448  T
Q  108 agattagtttgag 120  Q
    |||||||||||||    
T  19645449 agattagtttgag 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 1088700 - 1088813
Alignment:
Q  6 acataagagaactcatgtgggagatactcata-gaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatata 104  Q
    ||||||||| |||||| ||||||||||||| | |||||||||| ||||| |||||||||||| |||||||  |||||||||||||| || ||||||||||    
T  1088700 acataagagtactcatatgggagatactcaaaagaaactcattatagaa-tgaatagattgataaaagatgatgaatgagtacaatagtgttcctatata 1088798  T
Q  105 tagagattagtttga 119  Q
    |||||||||||||||    
T  1088799 tagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 15149108 - 15149167
Alignment:
Q  29 atactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtaca 88  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  15149108 atactcaaagaaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 9415252 - 9415205
Alignment:
Q  6 acataagagaactcatgtgggagatactcatagaaactcattgtagaa 53  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9415252 acataagagtactcatgtgggagatactcatagaaactcattgtagaa 9415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 8915651 - 8915570
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtaca 88  Q
    |||||||| |||| ||||| ||||||||||||||||| ||| |||||||||||||||| | |||||||  | ||||||||||    
T  8915651 cataagagtactcgtgtggaagatactcatagaaacttattatagaaatgaatagattaataaaagatgctaaatgagtaca 8915570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 20985856 - 20985937
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtaca 88  Q
    |||||||| |||||||||| ||||||| ||| ||| ||||| |||||||||||||||||| ||||||||   ||||||||||    
T  20985856 cataagagtactcatgtggtagatacttataaaaattcattatagaaatgaatagattgataaaagatagcaaatgagtaca 20985937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 15868514 - 15868462
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 15866702 - 15866650
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || |||||| |||||||||||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgag 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 33866221 - 33866169
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||| ||||    
T  33866221 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtctgag 33866169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 19645526 - 19645568
Alignment:
Q  185 ttgattactaactatagtctaactaccttaactaactacacat 227  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  19645526 ttgattactaactctagtctaactaccttaactaactccacat 19645568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 24544802 - 24544757
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtaga 52  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||    
T  24544802 cataagagtactcatgagggagatactcatagaaactcatagtaga 24544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 33869368 - 33869319
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagttt 117  Q
    |||||||| |||||| ||||||| || |||||||||||||||||||||||    
T  33869368 aaaagatagtgaatgcgtacaatagtgttcctatatatagagattagttt 33869319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 9415027 - 9414988
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaact 221  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  9415027 tagttgatcactaactctagtctaactaccttaactaact 9414988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 15149268 - 15149307
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaact 221  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  15149268 tagttgattactaactcaagtctaactaccttaactaact 15149307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 5378721 - 5378693
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  5378721 tagtctaactaccttaactaactacacat 5378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 20046543 - 20046658
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattga-aaaaagatattgaatgagtacaatcgtattcctatatat 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  20046543 cataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaaagatattgaatgagtacaatagtgttcctatatat 20046642  T
Q  106 -agagattagtttgag 120  Q
     |||||||||||||||    
T  20046643 aagagattagtttgag 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 44963346 - 44963233
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| | ||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||    
T  44963346 cataagagtattcatgagggagatactcaaagaaattcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatata 44963247  T
Q  107 gagattagtttgag 120  Q
    ||||||| ||||||    
T  44963246 gagattaatttgag 44963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 28014321 - 28014388
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagat 74  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28014321 cataagagtgctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagat 28014388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 4895768 - 4895654
Alignment:
Q  6 acataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaa-aaaagatattgaatgagtacaatcgtattcctatata 104  Q
    ||||||||| |||||| ||||||||||||||||| |  |||  | ||| |||||| |||||  |||||||  |||||||||||||| || ||||||||||    
T  4895768 acataagagtactcatctgggagatactcatagagatccatattggaa-tgaatatattgattaaaagatgatgaatgagtacaatagtgttcctatata 4895670  T
Q  105 tagagattagtttgag 120  Q
    ||||||||||||||||    
T  4895669 tagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 37405559 - 37405611
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 25471834 - 25471886
Alignment:
Q  22 gtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagat 74  Q
    |||||||||||| ||||||||||||| || ||||||||||||||| |||||||    
T  25471834 gtgggagatactaatagaaactcattatataaatgaatagattgataaaagat 25471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 28124697 - 28124749
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  28124697 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 28126524 - 28126576
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  28126524 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 8405690 - 8405631
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattga 66  Q
    |||||||| | ||||| |||||||| || |||||||||||||||||||||| ||||||||    
T  8405690 cataagagtattcatgggggagataatcgtagaaactcattgtagaaatgactagattga 8405631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 44963171 - 44963126
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||    
T  44963171 tagttgattactaactcaagtctaactaccttaactaactccacat 44963126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 44962291 - 44962246
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||| |||  |||||||||||||||||||||| |||||    
T  44962291 tagttgattactcactcaagtctaactaccttaactaacttcacat 44962246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 20046739 - 20046767
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  20046739 tagtctaactaccttaactaactacacat 20046767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 28124635 - 28124667
Alignment:
Q  7 cataagagaactcatgtgggagatactcataga 39  Q
    |||||||| ||||||||||||||||||||||||    
T  28124635 cataagagtactcatgtgggagatactcataga 28124667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 28124830 - 28124858
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  28124830 tagtctaactaccttaactaactacacat 28124858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 28126462 - 28126494
Alignment:
Q  7 cataagagaactcatgtgggagatactcataga 39  Q
    |||||||| ||||||||||||||||||||||||    
T  28126462 cataagagtactcatgtgggagatactcataga 28126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 28126657 - 28126685
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  28126657 tagtctaactaccttaactaactacacat 28126685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 30224413 - 30224300
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||    
T  30224413 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatata 30224314  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  30224313 gagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 5567609 - 5567496
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||    
T  5567609 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatata 5567510  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  5567509 gagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 25249189 - 25249076
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||| | ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||    
T  25249189 cataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatcatgaatgagtacaatagtgttcctatatata 25249090  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  25249089 gagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 31032052 - 31032164
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||  |||||||||  | |  | ||||||||||||    
T  31032052 cataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagatcatgaatgagtgtagtaatgttcctatatata 31032150  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  31032151 gagattagtttgag 31032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 3379172 - 3379275
Alignment:
Q  16 actcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagt 115  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||  |||||||||||||| || |||||  ||||||||||||||    
T  3379172 actcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaaaatgatgaatgagtacaatagttttccttaatatagagattagt 3379270  T
Q  116 ttgag 120  Q
    |||||    
T  3379271 ttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 6428925 - 6428810
Alignment:
Q  6 acataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaa--aaaagatattgaatgagtacaatcgtattcctatat 103  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||| | ||||||||||  |  |||||||  ||||||| |||||| || |||||||||    
T  6428925 acataagagtactcatgtgagagatactcaaagaaactcattgtag-agtgaatagatttgattaaaagatgatgaatgattacaatagtgttcctatat 6428827  T
Q  104 atagagattagtttgag 120  Q
    |||||||||||||||||    
T  6428826 atagagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 3375506 - 3375584
Alignment:
Q  41 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||| |  ||||||||||||||||||||||||||    
T  3375506 actcattgtagaaatgaatagattgaaaaa-gataatgaatgggtacaatagagttcctatatatagagattagtttgag 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 36535924 - 36535993
Alignment:
Q  51 gaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||||||||||| |||||||  |||||||||||||  ||||| |||||||||||||||||||||||    
T  36535924 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctatatatagagattagtttgag 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 19473713 - 19473656
Alignment:
Q  8 ataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattga 66  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  19473713 ataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattga 19473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 19544638 - 19544581
Alignment:
Q  8 ataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattga 66  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  19544638 ataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattga 19544581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 19588058 - 19588115
Alignment:
Q  8 ataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattga 66  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  19588058 ataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattga 19588115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 30224238 - 30224193
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  30224238 tagttgattactaactctagtctaactaccttaactaactccacat 30224193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 5567434 - 5567389
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||    
T  5567434 tagttgattactaactctagtctaactactttaactaacttcacat 5567389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 31032222 - 31032267
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||    
T  31032222 tagttgattactaactcaagtctaactaccttaactaactccacat 31032267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 14939697 - 14939631
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagat 74  Q
    |||| ||| |||||||| | |||||||| |||||||||||| ||| |||||||||||||| |||||||    
T  14939697 catatgagtactcatgtagaagatactcgtagaaactcattatag-aatgaatagattgataaaagat 14939631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 3375646 - 3375691
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||   |||||||||||||||||||||| |||||    
T  3375646 tagttgattactaacagaagtctaactaccttaactaactccacat 3375691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 7040544 - 7040431
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||    
T  7040544 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatata 7040445  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  7040444 gagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 23564723 - 23564836
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||    
T  23564723 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatata 23564822  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  23564823 gagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 18656291 - 18656178
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||    
T  18656291 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatata 18656192  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  18656191 gagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 54296611 - 54296498
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaa-aaaagatattgaatgagtacaatcgtattcctatatat 105  Q
    |||||||| ||| ||| |||||||||||||||||||||||| || |||||||| ||||||  |||||||  |||||||||||||| || |||||||||||    
T  54296611 cataagagtactgatgagggagatactcatagaaactcattata-aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcctatatat 54296513  T
Q  106 agagattagtttgag 120  Q
    |||||||||||||||    
T  54296512 agagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 52545151 - 52545218
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagata 75  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  52545151 cataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagata 52545218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 56074694 - 56074761
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagat 74  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||    
T  56074694 cataagagtactcatgtgggagatactcatagaaactcgttatagaaatgaatagaatgataaaagat 56074761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 23566449 - 23566510
Alignment:
Q  59 tagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  23566449 tagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 23985946 - 23985845
Alignment:
Q  18 tcatgtgggagatactcatagaaactcattgtagaaatgaatagatt-gaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtt 116  Q
    ||||||||||||||  |||||| |||||| | |||| | |||||||| || |||||||  |||||||||||||| || ||||||||||||||||||||||    
T  23985946 tcatgtgggagataaccatagagactcataggagaa-tcaatagatttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtt 23985848  T
Q  117 tga 119  Q
    |||    
T  23985847 tga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 3529251 - 3529308
Alignment:
Q  63 ttgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 52520785 - 52520671
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaa--aaaagatattgaatgagtacaatcgtattcctatata 104  Q
    |||||||| |||||||||||||||||||||||| |  |||  | |||||||| | |||  |  |||||||  |||||||||||||| || ||||||||||    
T  52520785 cataagagtactcatgtgggagatactcatagagatccatatt-gaaatgaaaatatttgattaaaagatgatgaatgagtacaatagtgttcctatata 52520687  T
Q  105 tagagattagtttgag 120  Q
    ||||||||||||||||    
T  52520686 tagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 7040369 - 7040324
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  7040369 tagttgattactaactctagtctaactaccttaactaactccacat 7040324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 18656116 - 18656071
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  18656116 tagttgattactaactctagtctaactaccttaactaacttcacat 18656071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 23564898 - 23564943
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  23564898 tagttgattactaactctagtctaactaccttaactaactccacat 23564943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 18395691 - 18395774
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagat-tgaaaaaagatattgaatgagtacaat 90  Q
    |||||||| | |||||||||||||||||||| | |||||| |||  | ||||||||| ||| |||||||| ||||||||||||||    
T  18395691 cataagagtattcatgtgggagatactcatatagactcatagta-tagtgaatagatatgataaaagatagtgaatgagtacaat 18395774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 52518943 - 52518911
Alignment:
Q  7 cataagagaactcatgtgggagatactcataga 39  Q
    |||||||||||||||||||||||||||||||||    
T  52518943 cataagagaactcatgtgggagatactcataga 52518911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 3274663 - 3274702
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaact 221  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  3274663 tagttgattactaactatagttttactaccttaactaact 3274702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 52518748 - 52518720
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  52518748 tagtctaactaccttaactaactacacat 52518720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 52518881 - 52518829
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||  ||| |||||||||  || ||||||||||||||||||||||||||    
T  52518881 aaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 52520590 - 52520562
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  52520590 tagtctaactaccttaactaactacacat 52520562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 29758303 - 29758190
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||    
T  29758303 cataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatata 29758204  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  29758203 gagattagtttgag 29758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 8759115 - 8759207
Alignment:
Q  10 aagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctata 102  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||  |||||||||||||| || ||||||||    
T  8759115 aagagtactcatgagggagatactcaaagaaactcattgtagaaatgaacagattgataaaagatgatgaatgagtacaatagtgttcctata 8759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 18612088 - 18612172
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaag-atattgaatgagtacaat 90  Q
    |||||||| |||||||||||||||| | | | ||||||||| |||||||||||||||||| ||||| ||| ||| ||||||||||    
T  18612088 cataagagtactcatgtgggagatatttacaaaaactcattatagaaatgaatagattgataaaagtataatgattgagtacaat 18612172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 8759206 - 8759251
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||    
T  8759206 tagttgattactaactcaagtctaactaccttaactaactccacat 8759251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 29758128 - 29758083
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||    
T  29758128 tagttgattactaagtctagtctaactaccttaactaactccacat 29758083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 17449490 - 17449381
Alignment:
Q  10 aagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagag 109  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||    
T  17449490 aagagtactcatgtgggagatactcatagaatctcattgtagacatgaatagattga-aaaagataatgaatgagtacaatagtgttcctatatatagag 17449392  T
Q  110 attagtttgag 120  Q
    |||||||||||    
T  17449391 attagtttgag 17449381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 9312202 - 9312099
Alignment:
Q  18 tcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaa-aaaagatattgaatgagtacaatcgtattcctatatatagagattagtt 116  Q
    |||||||||||||||||||||  |||||| | |||    | |||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||    
T  9312202 tcatgtgggagatactcatagtgactcatgggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagtt 9312103  T
Q  117 tgag 120  Q
    ||||    
T  9312102 tgag 9312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 48941786 - 48941670
Alignment:
Q  8 ataagagaactcatgtgggagatactcatagaaactcattgta--gaaatgaatagattgaa--aaaagatattgaatgagtacaatcgtattcctatat 103  Q
    ||||||| | ||||||| |||||||||||| ||||||||| ||  ||||||||||||||  |  |||||||| |||||||||||||| || ||  ||| |    
T  48941786 ataagagtattcatgtgagagatactcatataaactcattatatagaaatgaatagatttgattaaaagatactgaatgagtacaatagtgtttatatgt 48941687  T
Q  104 atagagattagtttgag 120  Q
    |||||||||||||||||    
T  48941686 atagagattagtttgag 48941670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 3282923 - 3282871
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 3284624 - 3284572
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 5924834 - 5924900
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagat 74  Q
    |||||||| | |||| | ||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  5924834 cataagagtattcatataggagatactcatagaaactcattatag-aatgaatagattgataaaagat 5924900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 48940684 - 48940639
Alignment:
Q  182 tagttgattactaactatagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||    
T  48940684 tagttgattactaactcttgtctaactaccttaactaactccacat 48940639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 9310534 - 9310482
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || |||||||||||||| |||| ||||||    
T  9310534 aaaagataatgaatgagtacaatagtgttcctatatatagatattaatttgag 9310482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 16808688 - 16808740
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||  |||||||||||||| || ||| ||||||||||||||||||||||    
T  16808688 aaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 16808821 - 16808849
Alignment:
Q  199 tagtctaactaccttaactaactacacat 227  Q
    |||||||||||||||||||||||||||||    
T  16808821 tagtctaactaccttaactaactacacat 16808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 58968 - 58856
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatata 106  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||  |||||||||||||| || ||||||||||||    
T  58968 cataagagtactcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatata 58870  T
Q  107 gagattagtttgag 120  Q
    ||||||||||||||    
T  58869 gagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 39325 - 39260
Alignment:
Q  9 taagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagat 74  Q
    |||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  39325 taagagtactcatgtgggagatactcataaaaactcattatagaaatgaatagattgataaaagat 39260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 25076173 - 25076273
Alignment:
Q  17 ctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcg-tattcctatatatagagattagt 115  Q
    |||||| | |||||| ||||||||||||||| |||||||||||| ||||| |||||||  |||| ||||||||| | | ||||||||| |||||||||||    
T  25076173 ctcatgagagagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatctagagattagt 25076272  T
Q  116 t 116  Q
    |    
T  25076273 t 25076273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 25134142 - 25134242
Alignment:
Q  17 ctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcg-tattcctatatatagagattagt 115  Q
    |||||| | |||||| ||||||||||||||| |||||||||||| ||||| |||||||  |||| ||||||||| | | ||||||||| |||||||||||    
T  25134142 ctcatgagagagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatctagagattagt 25134241  T
Q  116 t 116  Q
    |    
T  25134242 t 25134242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 20012971 - 20013029
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattga 66  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  20012971 cataagagtactcatgtgggagatactcatagaaactcattatag-aatgaattgattga 20013029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 39787168 - 39787220
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||| | |||||||||| ||| || ||||||||||||||||||||||||||    
T  39787168 aaaagacagtgaatgagtaaaatagtgttcctatatatagagattagtttgag 39787220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 6348 - 6296
Alignment:
Q  68 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 120  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 19128 - 19063
Alignment:
Q  7 cataagagaactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgaaaaaaga 73  Q
    |||| ||| ||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||    
T  19128 cataggagtactcatgtgggagatgctcatagaaactcattatag-aatgaatagattgataaaaga 19063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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