View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_150 (Length: 227)
Name: NF3223_high_150
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_150 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 34713100 - 34713257
Alignment:
| Q |
4 |
aaacaaggaaagaattcctaaacagagaaccatggataatcaagtttcaaataattacatttttatgcttcaatatgattgatgtatatcatttaagtat |
103 |
Q |
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| T |
34713100 |
aaacaaggaaataattcctaaacagagaaccatggataatcaagtttcaaataattacatttttatgcttcaatatgattgatgtatatcatttaagtat |
34713199 |
T |
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| Q |
104 |
tctatataagaaaggtataacctcaaaccatctaacaatgagattgataagaatataa |
161 |
Q |
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| T |
34713200 |
tctatataagaaaggtataacctcaaaccatccaacaatgagattgataagaatataa |
34713257 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 34706590 - 34706673
Alignment:
| Q |
16 |
aattcctaaacagagaaccatggataatcaagtttcaaataattacatttttatgcttcaatatgattgatgtatatcatttaa |
99 |
Q |
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| T |
34706590 |
aattcttaaacagagcctcatggataatcaagtttcaaataacaacatttttttccttcaatatgattgatatgtatcgtttaa |
34706673 |
T |
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