View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_154 (Length: 223)
Name: NF3223_high_154
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_154 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4469809 - 4470031
Alignment:
| Q |
1 |
cggcaccgtaaatattcctccggcaacctccactgctgcagccacaattccaggcgatatcccgtgattgataagctgaaagcatccaaaccttgctata |
100 |
Q |
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| T |
4469809 |
cggcaccgtaaatattcctccggcaacctccactgcagcagccacaattccaggcgatatcccgtggttgataagctgaaagcatccaaaccttgctata |
4469908 |
T |
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| Q |
101 |
gattccaaaacaacgtcgatgagatcttcatcttcgtgaaaacacagagcaacgaaatctacttttggcggcgtttcgtcattgatctgtttcgggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4469909 |
gattccaaaacaacgtcgatgagatcttcatcttcgtgaaaacacagagcaacgaaatctacttttggcggcgtttcgtcattgatctgtttcgggaaaa |
4470008 |
T |
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| Q |
201 |
tcttgtccggtaatactagatct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4470009 |
tcttgtccggtaatactagatct |
4470031 |
T |
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