View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_16 (Length: 463)
Name: NF3223_high_16
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 231 - 453
Target Start/End: Complemental strand, 30767897 - 30767675
Alignment:
| Q |
231 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttc |
330 |
Q |
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| T |
30767897 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttc |
30767798 |
T |
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| Q |
331 |
taggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcctatggattcttc |
430 |
Q |
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| T |
30767797 |
taggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcctatggattcttc |
30767698 |
T |
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| Q |
431 |
ttcagaggttcatcatcacaggt |
453 |
Q |
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||||||||||||||||||||||| |
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| T |
30767697 |
ttcagaggttcatcatcacaggt |
30767675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30768127 - 30767942
Alignment:
| Q |
1 |
accataattcagctttcatttcaccacataatgttgaaactgatcctataccnnnnnnnccaactacatcttctacttcttcatccatcaattttcaaaa |
100 |
Q |
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| T |
30768127 |
accataattcagctttcatttcaccacataatgttgaaactgatcctatacctttttttccaactacatcttctacttcttcatccatcaattttcaaaa |
30768028 |
T |
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| Q |
101 |
ctacccttctgaaaaccttggcctctctcttcattccttccaagatcacaatggtttcattccatggcaatcgcaacaagtatgtg |
186 |
Q |
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| T |
30768027 |
ctacccttctgaaaaccttggcctctctcttcattccttccaagatcacaatggtttcattccatggcaatcacaacaagtatgtg |
30767942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 5053580 - 5053472
Alignment:
| Q |
233 |
ttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttcta |
332 |
Q |
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|||||||| ||||||| | ||||||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
5053580 |
ttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaact--cggtcatttcta |
5053483 |
T |
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| Q |
333 |
ggccaaggttc |
343 |
Q |
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|| |||||||| |
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| T |
5053482 |
ggtcaaggttc |
5053472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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