View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_2 (Length: 703)
Name: NF3223_high_2
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 589; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 693
Target Start/End: Original strand, 40841039 - 40841726
Alignment:
| Q |
18 |
aatttcactaccgcatccaggacctccggttaaccatatgacgacagggtcatccttactgtttcgagattcaaagaaaaaatagaacatcctgcaattg |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841039 |
aatttcactgccgcatccaggacctccggttaaccatatgacgacagggtcatccttactgtttcgagattcaaagaaaaaatagaacatcctgcaattg |
40841138 |
T |
|
| Q |
118 |
acataacaaattgttcaatggaaatatgtccatgcacacgttattatgatgtggggtgacataaagtgataaaatatttacctagcatgaccaggaacga |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841139 |
gcataacaaattgttcaatggaaatatgtccatgcaaacgttattatgatgtggggtgacataaagtgataaaatatttacctagcatgaccaggaacga |
40841238 |
T |
|
| Q |
218 |
agaagactataataccctgcatgatgaccaagttcttctacagaataaccagagtcatcaaaaccagggaaagtgaactttttctccacaatgtttccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40841239 |
agaagactataataccctgcatgatgaccaagttcttcaacagaataaccagggtcatcaaaaccagggaaagtgaactttttctccacaatgtttcgat |
40841338 |
T |
|
| Q |
318 |
cgaggacaagaggatcattctctggtatgtttatggaacttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgttttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841339 |
agaggacaagaggatcattctctggtatgtttatggaacttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgttttt |
40841438 |
T |
|
| Q |
418 |
gggatg-agttg--gagatgagagtgaaggtgacatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgat |
514 |
Q |
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| T |
40841439 |
gggatgcagttgaagaaaggagaatgaaggtgaaatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgat |
40841538 |
T |
|
| Q |
515 |
gccatgttgttttgtttttgttgaaa---------aaatggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgccaatt |
605 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841539 |
gccatgttgttttgtttttgttgaaaaaatggaagaaatggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgccaatt |
40841638 |
T |
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| Q |
606 |
tggggtaaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctcaaccatttcttgtctgtg |
693 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841639 |
tgggataaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctcaaccatttcttgtctgtg |
40841726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 219 - 547
Target Start/End: Original strand, 40845795 - 40846126
Alignment:
| Q |
219 |
gaagactataataccctgcatgatgaccaagttcttctacagaataaccagagtcatcaaaaccagggaaagtgaactttttctccacaatgtttccatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
40845795 |
gaagactataataccctgcatgatgaccaagttcttcaacagaataaccagagtcatcaaaaccggggaaagtgaacttcttctccacaatgtttccatg |
40845894 |
T |
|
| Q |
319 |
gaggacaagaggatcattctctggtatgtttatggaacttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgtttttg |
418 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40845895 |
gaggacatgaggatcattctctggtatgtttatggaacttttaggaaaaaggttaagtcctcttatgagagttgaagaaaggagaatgtcattgtttttg |
40845994 |
T |
|
| Q |
419 |
ggatg-agttg--gagatgagagtgaaggtgacatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatg |
515 |
Q |
| |
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||||| ||||| || | ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40845995 |
ggatgcagttgaagaaaggagagcgaaggtgaaatgaagaagaggaagtgcaacaacattgtaaaagacagacacattttgaggaaccttaaagatgatg |
40846094 |
T |
|
| Q |
516 |
ccatgttgttttgtttttgttgaaaaaatgga |
547 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
40846095 |
ccatgttgttttgtttttgttgaaaaaatgga |
40846126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 40845441 - 40845593
Alignment:
| Q |
18 |
aatttcactaccgcatccaggacctccggttaaccatatgacgacagggtcatccttactgtttcgagattcaaagaaaaaatagaacatcctgcaattg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40845441 |
aatttcactaccgcatccaggacctccggttaaccatatgatgacagggtcatccttactgtttcgagattcaaagaaaaaatagaacatcctgcaattg |
40845540 |
T |
|
| Q |
118 |
acataacaaattgttcaatggaaatatgtccatgcacacgttattatgatgtg |
170 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40845541 |
gcataacaaattgttcaatggaaatatgtccatgcacacattattatgatgtg |
40845593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 40851917 - 40852069
Alignment:
| Q |
18 |
aatttcactaccgcatccaggacctccggttaaccatatgacgacagggtcatccttactgtttcgagattcaaagaaaaaatagaacatcctgcaattg |
117 |
Q |
| |
|
||||||||| | |||||| || ||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
40851917 |
aatttcactgctgcatcctggccctccagttaaccatataacaacagggtcatccttagtgtttcgagattcaaagaaaaaatagaacatcctgcaatcg |
40852016 |
T |
|
| Q |
118 |
acataacaaattgttcaatggaaatatgtccatgcacacgttattatgatgtg |
170 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
40852017 |
acataacaaattgttcaatggaaacatgtcttcgcacacattattatgatgtg |
40852069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 219 - 388
Target Start/End: Original strand, 40852566 - 40852735
Alignment:
| Q |
219 |
gaagactataataccctgcatgatgaccaagttcttctacagaataaccagagtcatcaaaaccagggaaagtgaactttttctccacaatgtttccatc |
318 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
40852566 |
gaagacgataatagcctgcatgatgaccaagttcttcaacagaagcaccagagtcaacaaaaccagggaaagtgaacttcttctccataatatttccatg |
40852665 |
T |
|
| Q |
319 |
gaggacaagaggatcattctctggtatgtttatggaacttttaggaaaaaggttaagtcctcttatgaga |
388 |
Q |
| |
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|| | | ||||||||||||||||| ||||||||||| ||| |||||||| ||||| |||||||||||| |
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| T |
40852666 |
aagaaaatgaggatcattctctggtgtgtttatggaatcttttggaaaaagattaagccctcttatgaga |
40852735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 388 - 545
Target Start/End: Original strand, 40852765 - 40852913
Alignment:
| Q |
388 |
agttgaagaaaggagaatgtcattgtttttgggatgagttggagatgagagtgaaggtgacatgaagaagaggaagtgcaaaaacattgtaaaagacaga |
487 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || |||||||||| |||| |||| ||||||| ||||| ||||| ||||||||||| |
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| T |
40852765 |
agttgaagaaaggagaatgtcattgtttgtgggataagctggagatgagtatgaatgtgaaatgaaga---ggaag------aacatcataaaagacaga |
40852855 |
T |
|
| Q |
488 |
cacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40852856 |
cacattttgaggaaccttaaagatgatgccatgttgccttgtttttgttgaaagaatg |
40852913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 577 - 693
Target Start/End: Original strand, 26809206 - 26809322
Alignment:
| Q |
577 |
tttatcctcttttatttaggttgccaatttggggtaaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctca |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26809206 |
tttatcctcttttatttaggttgccaatttggagtaaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctca |
26809305 |
T |
|
| Q |
677 |
accatttcttgtctgtg |
693 |
Q |
| |
|
|| |||||||||||||| |
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| T |
26809306 |
acaatttcttgtctgtg |
26809322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 21114664 - 21114572
Alignment:
| Q |
21 |
ttcactaccgcatccaggacctccggttaaccatatgacgacagggtcatccttac---tgtttcgagattcaaagaaaaaatagaacatcct |
110 |
Q |
| |
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|||||| ||||| || |||||||| || |||||||| || || |||||||||||| ||| ||| |||||||||||||||||||||||||| |
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| T |
21114664 |
ttcactgccgcaacctggacctccagtcaaccatatcacaactgggtcatccttaggagtgtctcgtgattcaaagaaaaaatagaacatcct |
21114572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 21124262 - 21124164
Alignment:
| Q |
21 |
ttcactaccgcatccaggacctccggttaaccatatgacgacagggtcatccttactgttt---cgagattcaaagaaaaaatagaacatcctgcaatt |
116 |
Q |
| |
|
|||||||| ||| || |||||||| || |||||||| || || ||| |||||||| | ||| | |||||||||||||||||||||| ||||||||| |
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|
| T |
21124262 |
ttcactactgcaacctggacctccagtcaaccatatcacaactggggcatccttattattttttcttgattcaaagaaaaaatagaacaacctgcaatt |
21124164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 21144352 - 21144254
Alignment:
| Q |
21 |
ttcactaccgcatccaggacctccggttaaccatatgacgacagggtcatccttactgttt---cgagattcaaagaaaaaatagaacatcctgcaatt |
116 |
Q |
| |
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|||||||| ||| || |||||||| || |||||||| || || ||| |||||||| | ||| | ||||||||||||||||||||||||||| |||| |
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| T |
21144352 |
ttcactactgcaacctggacctccagtcaaccatatcacaactggggcatccttattattttttcttgattcaaagaaaaaatagaacatcctgaaatt |
21144254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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