View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_24 (Length: 430)
Name: NF3223_high_24
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 82 - 408
Target Start/End: Complemental strand, 32126505 - 32126176
Alignment:
| Q |
82 |
ctgaatcacagatcagaattctcttcctcctcagaaaaacgaatatgctttccttttggagttggcaaccccttcaaatgcaaaatctcagagttagaat |
181 |
Q |
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| T |
32126505 |
ctgaatcacagatcagatttctcttcctcctcagaaaaacgaatatgctttccttttggagttggcaaccccttcaaatgcaaaatctcagagttagaat |
32126406 |
T |
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| Q |
182 |
cagcagtttcttcaacaacctcttccacaatctcatcttcatcactatcatacaaaaatcttgtatgtttcccagcaaactttggaactgcatttccttc |
281 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32126405 |
cagcagattcttcaacaacctcttccacaatctcatcttcatcactatcatacaaaaatcttgtatgtttcccagcaaactttggaaccacatttccttc |
32126306 |
T |
|
| Q |
282 |
attcacaccaatgttgctcaaaccttcacacagttcatcaagtagcaaccctccatcagcatactcttcctcttcttcaacaccctcatagtaatcatcc |
381 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126305 |
attcacacctatgttgctcaaaccctcacacagttcatcaagtagcaaccctccatcagcatactcttcctcttcttcaacaccctcatagtaatcatcc |
32126206 |
T |
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| Q |
382 |
acctcatc---ttctacctcagctatttcc |
408 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
32126205 |
acctcatcttcttctacctcagctatttcc |
32126176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 4940794 - 4940670
Alignment:
| Q |
103 |
tcttcctcctcagaaaaacgaatatgctttccttttggagttggcaaccccttcaaatgcaaaatctcagagttagaatcagcagtttcttcaacaacct |
202 |
Q |
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|||| ||||| | ||||| ||||||| ||||||||||||||| |||||||||||| ||||||||| |||| |||||| || ||||||| |||||| |
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| T |
4940794 |
tctttctcctgataaaaatgaatatgatttccttttggagttcataaccccttcaaactgaaaatctcaaagttggaatcaagagattcttcatcaacct |
4940695 |
T |
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| Q |
203 |
cttccacaatctcatcttcatcact |
227 |
Q |
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||| |||||||||||| || ||||| |
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| T |
4940694 |
ctttcacaatctcatcatcgtcact |
4940670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 8620554 - 8620615
Alignment:
| Q |
103 |
tcttcctcctcagaaaaacgaatatgctttccttttggagttggcaaccccttcaaatgcaa |
164 |
Q |
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|||||||||||||||||||||| ||| || |||||||| ||||| || |||||||||||||| |
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| T |
8620554 |
tcttcctcctcagaaaaacgaagatgtttcccttttggtgttggtaatcccttcaaatgcaa |
8620615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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