View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_28 (Length: 416)
Name: NF3223_high_28
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 401
Target Start/End: Complemental strand, 3073732 - 3073337
Alignment:
| Q |
6 |
agcagcagagagtgttaaagaagctatttggctttgaggtttggtcaatgaacttggtcttacacagggtgttcttactgtgttttgtgacagccaaagt |
105 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073732 |
agcaacagagggtgttaaagaagctatttggctttgaggtttggtcaatgaacttggtcttacacagggtgttcttactgtgttttgtgacagccaaagt |
3073633 |
T |
|
| Q |
106 |
gctattcatttgaccaagaataatccttatcacgacaagaccaaacatattgatgtaaggcgtcactttgtccgagatattgttgttgctggtgaaattg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3073632 |
gctattcatttgaccaagaataatccttatcacgacaagaccaaacatattgatgtaaggcgtcactttatccgagatattgttgttgctggtgaaattg |
3073533 |
T |
|
| Q |
206 |
tagttgaaaagattcacacttctaagaatccagcagatatgctttaccaagccacttccaaataccaagtttcagcattgtctggacttggttggtctct |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073532 |
cagttgaaaagattcacacttctaagaatccagcagatatgctttaccaagccacttccaaataccaagtttcagcattgtctggacttggttggtctct |
3073433 |
T |
|
| Q |
306 |
acagcacttaagtgcccttcggggctttatttggcgatgagcacttgatgaattcgaaccaaggtggagattgttggattatgtggctctcattca |
401 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3073432 |
acaacacttaagtgcccttcggggctttatttggcgatgagcacttgatgaattcgaaacaaggtggagattgttggattatgtggctctcattca |
3073337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 400
Target Start/End: Original strand, 23047619 - 23048012
Alignment:
| Q |
6 |
agcagcagagagtgttaaagaagctatttggctttgaggtttggtcaatgaacttggtcttacacagggtgttcttactgtgttttgtgacagccaaagt |
105 |
Q |
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|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23047619 |
agcaacagagggtgttaaagaagctatttggcttcgaggtttggtcaatgaacttggtcttacacagggtgttcttactgtattttgtgacagccaaagt |
23047718 |
T |
|
| Q |
106 |
gctattcatttgaccaagaataatccttatcacgacaagaccaaacatattgatgtaaggcgtcactttgtccgagatattgttgttgctggtgaaattg |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
23047719 |
gctattcatttgaccaagaataatcgttatcacgacaagaccaaacatattgatgtaagacgtcactttatccgagatattgttgttgctggtgaaattg |
23047818 |
T |
|
| Q |
206 |
tagttgaaaagattcacacttctaagaatccagcagatatgctttaccaagccacttccaaataccaagtttcagcattgtctggacttggttggtctct |
305 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23047819 |
cagttgaaaagattcacacttctaagaatccagaagatatgc-ttaccaagccacttccaaataccaagtttcagcattgcctggacttggttggtctct |
23047917 |
T |
|
| Q |
306 |
acagcacttaagtgcccttcggggctttatttggcgatgagcacttgatgaattcgaaccaaggtggagattgttggattatgtggctctcattc |
400 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
23047918 |
acagcacttgaacgcccttcggggctttatttggcgatgagcacttgtcgaattcgaaccaaggtggagattgttagattatgtggttctaattc |
23048012 |
T |
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