View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_29 (Length: 415)

Name: NF3223_high_29
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_29
NF3223_high_29
[»] chr4 (5 HSPs)
chr4 (180-386)||(53472289-53472496)
chr4 (15-180)||(53472093-53472258)
chr4 (15-181)||(9009980-9010146)
chr4 (64-181)||(29234732-29234849)
chr4 (263-352)||(29234936-29235030)
[»] chr6 (4 HSPs)
chr6 (31-136)||(22258704-22258809)
chr6 (54-181)||(16909706-16909833)
chr6 (296-364)||(16909953-16910022)
chr6 (384-415)||(16910069-16910100)
[»] chr5 (1 HSPs)
chr5 (31-168)||(20289716-20289853)
[»] chr3 (1 HSPs)
chr3 (128-177)||(30046656-30046705)
[»] chr1 (1 HSPs)
chr1 (299-331)||(7154999-7155031)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 180 - 386
Target Start/End: Original strand, 53472289 - 53472496
Alignment:
Q  180 aattattcctcccagtgatcttatcgactttcaaacttttacctccaaccattgttttcaaacttttacc-ccaaccattgtttccgcctgaacagattc 278  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  53472289 aattattcctcctagtgaacttgtcgactttcaaacttttacctccaaccattgttttcaaacttttacctccaaccattgtttccgcctgaacaaattc 53472388  T
Q  279 aaaccagctctgataccagtttgttataacaagacgcaagaataataacaatatagttaaaggcagaatgaaaaatgacacaagatggtatccagcaatg 378  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||| |||||    
T  53472389 aaaccagctctgataccaatttgttataacaagacgcaagaataataacgatatagtaaaagacaaaatgaaaaatgacacaagatggtatccaacaatg 53472488  T
Q  379 tactgact 386  Q
    ||||||||    
T  53472489 tactgact 53472496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 53472093 - 53472258
Alignment:
Q  15 cacagaccggcagcggtatcctcttcagcaaccttagtgatgatatgatcttccaaagcaaggagcaacgtagaatgtgtcttctactctagagtggcga 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  53472093 cacagaccggcagcggtatcttcttcagcaaccttagtgatgatatgatcttccaaagcaaggagcaacgtagaatgtgtcttctcctttagagtggcga 53472192  T
Q  115 tatcagcaaatatagggtttggtgcaggatttaacaaaggtgtacatagaccttgctgtttaagca 180  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53472193 tatcagcagatagagggtttggtgcaggctttaacaaaggtgtacatagaccttgctgtttaagca 53472258  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 9009980 - 9010146
Alignment:
Q  15 cacagaccggcagcggtatcctcttcagcaaccttagtgatgatatgatcttccaaagcaaggagcaacgtagaatgtgtcttctactctagagtggcga 114  Q
    ||||||| || |||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |  |||||||    
T  9009980 cacagactggtagcgatatcctcttcaacaacctcagtgatgatatgatcttccaaaacaaggagcaacgtagaatgtgccttctcctccatggtggcga 9010079  T
Q  115 tatcagcaaatatagggtttggtgcaggatttaacaaaggtgtacatagaccttgctgtttaagcaa 181  Q
    |||||| |  || ||||||||| ||| | ||||| |||||  | |||||| |||| |||||||||||    
T  9010080 tatcagtaggtaaagggtttggcgcaagctttaaaaaaggcatccatagatcttgttgtttaagcaa 9010146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 29234732 - 29234849
Alignment:
Q  64 cttccaaagcaaggagcaacgtagaatgtgtcttctactctagagtggcgatatcagcaaatatagggtttggtgcaggatttaacaaaggtgtacatag 163  Q
    ||||||||||||||||||||||||| |||| ||| | ||| |||||| |||||||||||  || ||| |||| |||||| ||||||||||||||  ||||    
T  29234732 cttccaaagcaaggagcaacgtagattgtgccttttcctccagagtgacgatatcagcaggtagaggatttgatgcaggctttaacaaaggtgtctatag 29234831  T
Q  164 accttgctgtttaagcaa 181  Q
    ||| ||||||||||||||    
T  29234832 accatgctgtttaagcaa 29234849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 352
Target Start/End: Original strand, 29234936 - 29235030
Alignment:
Q  263 ccgcctgaacagattcaaaccagctctgataccagtttgttataacaagacgcaagaataataaca-----atatagttaaaggcagaatgaaaa 352  Q
    ||||||||||| || | ||||||||||| ||| |||||||||||||  ||||| |||||||| |||     ||||||| ||||||||||||||||    
T  29234936 ccgcctgaacatatccgaaccagctctggtactagtttgttataacgcgacgcgagaataatgacaataatatatagtaaaaggcagaatgaaaa 29235030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 22258809 - 22258704
Alignment:
Q  31 tatcctcttcagcaaccttagtgatgatatgatcttccaaagcaaggagcaacgtagaatgtgtcttctactctagagtggcgatatcagcaaatatagg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | | ||||||||||||||||||| || |||    
T  22258809 tatcctcttcagcaaccttagtgatgatatgatcttccaaagcaaggagcagcgcagaatgtgtcttctccaccagagtggcgatatcagcaagtagagg 22258710  T
Q  131 gtttgg 136  Q
    ||||||    
T  22258709 gtttgg 22258704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 16909706 - 16909833
Alignment:
Q  54 atgatatgatcttccaaagcaaggagcaacgtagaatgtgtcttctactctagagtggcgatatcagcaaatatagggtttggtgcaggatttaacaaag 153  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||   | |||||  | ||||||||   || ||||||||| ||||| ||||||||||    
T  16909706 atgatataatcttccaaagcaaggagcatcgtagaatgtgccttctctaccagagtttcaatatcagctggtagagggtttggcgcaggctttaacaaag 16909805  T
Q  154 gtgtacatagaccttgctgtttaagcaa 181  Q
    |||| |||||||| ||||||||||||||    
T  16909806 gtgtccatagaccctgctgtttaagcaa 16909833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 16909953 - 16910022
Alignment:
Q  296 agtttgttataacaagacgcaagaataataacaat-atagttaaaggcagaatgaaaaatgacacaagat 364  Q
    |||||||||||||| ||||| |||||||| ||||| ||||| |||| || ||||||||| ||||||||||    
T  16909953 agtttgttataacaggacgcgagaataatgacaataatagtaaaagacataatgaaaaacgacacaagat 16910022  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 415
Target Start/End: Original strand, 16910069 - 16910100
Alignment:
Q  384 actgaaaagaattcactataatcgataattac 415  Q
    ||||||||||||||||||||||||||||||||    
T  16910069 actgaaaagaattcactataatcgataattac 16910100  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 20289716 - 20289853
Alignment:
Q  31 tatcctcttcagcaaccttagtgatgatatgatcttccaaagcaaggagcaacgtagaatgtgtcttctactctagagtggcgatatcagcaaatatagg 130  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| |||||||||  |||| |||||||||||||| |||||||  || |||    
T  20289716 tatcctcttcagcgacctcagtgatgatatgatcatccaaagcatggagcaacatagaatgtgctttctcctctagagtggcgaaatcagcaggtagagg 20289815  T
Q  131 gtttggtgcaggatttaacaaaggtgtacatagacctt 168  Q
    || ||| | ||| |||| ||||||||| ||||||||||    
T  20289816 gtatggcgtaggctttatcaaaggtgtccatagacctt 20289853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 30046705 - 30046656
Alignment:
Q  128 agggtttggtgcaggatttaacaaaggtgtacatagaccttgctgtttaa 177  Q
    ||||||||||||||| |||||||||||| | |||||||| || |||||||    
T  30046705 agggtttggtgcaggctttaacaaaggtctccatagaccctgttgtttaa 30046656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 7154999 - 7155031
Alignment:
Q  299 ttgttataacaagacgcaagaataataacaata 331  Q
    |||||||||||||||||||||||||| ||||||    
T  7154999 ttgttataacaagacgcaagaataatgacaata 7155031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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