View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_30 (Length: 412)
Name: NF3223_high_30
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 46933054 - 46932768
Alignment:
| Q |
1 |
aatgtgtgtgtgaatagttgataaataatgagagaaattgagtacaagagaggaaatgctggtttgatgcatgttaatgttactaagaagctctatttat |
100 |
Q |
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| T |
46933054 |
aatgtgtgtgtgaatagttgataaataatgagagaaattgagtacaagagaggaaatgctggtttgatgcatgttaatgttactaagaagctctatttat |
46932955 |
T |
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| Q |
101 |
acatgatttgttaaacactaaaaattaatatgatattgtcaaactccatgatttgttcaataataaataataatataggctctctagttctaaagtcaaa |
200 |
Q |
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| T |
46932954 |
acatgatttgttaaacactaaaaattaatatgatattgtcaaactccatgatttgttcaataataataaataatataggctctctagttctaaagtcaaa |
46932855 |
T |
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| Q |
201 |
agaccaagtcttaataatacgcatacttctgttaaatggataatggtattggctcctctgcacttgcaataagtaagaccaattctg |
287 |
Q |
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| T |
46932854 |
agaccaagtcttaataatacgcatacttctattaaatggataatggtattggctcctctgcacttgcaataagtaagaccaattctg |
46932768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 46932672 - 46932635
Alignment:
| Q |
359 |
tagtttctttttagtgaagacattcatggatgaggttg |
396 |
Q |
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| T |
46932672 |
tagtttctttttagtgaagacattcatggatgaggttg |
46932635 |
T |
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