View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_36 (Length: 396)
Name: NF3223_high_36
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 38860873 - 38860490
Alignment:
| Q |
1 |
ctatcagaattcaagcacaaacttgagcaacaacaagctagtcctttggcatcaccacctatttcttcacaaacaaagatggtaagtgattaagctacat |
100 |
Q |
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| T |
38860873 |
ctatcagaattcaagcacaaacttgagcaacaacaagctagtcctttggcatcaccacctatttcttcacaaacaaagatggtaagtaattaagctacgt |
38860774 |
T |
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| Q |
101 |
acattgaattattgattatttttctactgatttttaacaatgtacaatgtgcattattagagtaacagggtattgtacccgagtgaatatggcgctgacc |
200 |
Q |
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| T |
38860773 |
acattgaattattgattatttttctactgatttttaacaatgtacaatgtgcattattagagtaacagggtattgtacccgagtgaatatggcgctgacc |
38860674 |
T |
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| Q |
201 |
caacaggatcagaagagagtagtgatgccattttgaaagtagtggaggatgcatttaagttgcaaaagggtcttcaattggtagcaggggtgaatgattt |
300 |
Q |
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| T |
38860673 |
caacaggatcagaagagagtagtgatgccattttgaaagtagtggaggatgcatttaagttgcaaaagggtcttcaattggtagcaggggtgaatgattt |
38860574 |
T |
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| Q |
301 |
gggaggtgttattattgatttgcaaggtggagactacaaaatcagtaagccaattactttactcccaggtggcaatattgtggt |
384 |
Q |
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| T |
38860573 |
gggaggtgttattattgatttgcaaggtggagactacaaaatcagtaagccgattactttactcccaggtggcaatattgtggt |
38860490 |
T |
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