View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_39 (Length: 387)

Name: NF3223_high_39
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_39
NF3223_high_39
[»] chr5 (3 HSPs)
chr5 (1-365)||(2066727-2067091)
chr5 (330-365)||(3181729-3181764)
chr5 (319-365)||(1427686-1427732)
[»] chr3 (15 HSPs)
chr3 (106-167)||(1889348-1889409)
chr3 (330-365)||(7398183-7398218)
chr3 (323-366)||(746380-746423)
chr3 (322-365)||(2644358-2644401)
chr3 (322-365)||(2659148-2659191)
chr3 (137-172)||(23197253-23197288)
chr3 (137-167)||(1438237-1438267)
chr3 (137-167)||(1936767-1936797)
chr3 (323-365)||(7942497-7942539)
chr3 (142-172)||(23239275-23239305)
chr3 (106-167)||(1890814-1890875)
chr3 (114-167)||(1897435-1897488)
chr3 (114-167)||(1906881-1906934)
chr3 (137-170)||(1930956-1930989)
chr3 (335-368)||(7442986-7443019)
[»] chr4 (1 HSPs)
chr4 (137-170)||(20019556-20019589)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 2066727 - 2067091
Alignment:
Q  1 ctattgattgaaaataattccagaagtcactcgcaatcaaatcaagtacaaagtaaataatataaagggaagcaaacatatatgttgccgttgagtctca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2066727 ctattaattgaaaataattccagaagtcactcgcaatcaaatcaagtacaaagtaaataatataaagggaagcaaacatatatgttgccgttgagtctca 2066826  T
Q  101 tgcttaagtgacgtagcaccacatctacgttcagggattaaaaacaaggtgatatcaaactctcaacacaaatttccggggtcctttcaaaattaccaca 200  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2066827 tgcttaagtgacgtagcaccacatctacgttcagatattaaaaacaagatgatatcaaactctcaacacaaatttccgggatcctttcaaaattaccaca 2066926  T
Q  201 cttaaaagtacaattcctagaattgtagacaaatatctttgaatgcggacaaatcttcaccaacacttgatcattctcaaaaatatataccgcctcgatg 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2066927 cttgaaagtacaattcctagaattgtagacaaatatctttgaatgcgggcaaatcttcaccaacacttgatcattctcaaaaatatgtaccgcctcgatg 2067026  T
Q  301 tgatatttactagaatctattgtgtacagtttaatccaagactcttcatttccatactccttcat 365  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  2067027 tgatatttactagaatctattgtgtacagtttaatccaagaccctacatttccatactccttcat 2067091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 3181764 - 3181729
Alignment:
Q  330 tttaatccaagactcttcatttccatactccttcat 365  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3181764 tttaatccaagactcttcatttccatattccttcat 3181729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 1427686 - 1427732
Alignment:
Q  319 attgtgtacagtttaatccaagactcttcatttccatactccttcat 365  Q
    |||||| ||||||||||||||||||||  |||||||||||| |||||    
T  1427686 attgtgaacagtttaatccaagactctgtatttccatactctttcat 1427732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 1889348 - 1889409
Alignment:
Q  106 aagtgacgtagcaccacatctacgttcagggattaaaaacaaggtgatatcaaactctcaac 167  Q
    ||||||| ||||||||||||||| |||  | ||||| |||||||||||||||||||||||||    
T  1889348 aagtgacatagcaccacatctacattctagcattaagaacaaggtgatatcaaactctcaac 1889409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 365
Target Start/End: Original strand, 7398183 - 7398218
Alignment:
Q  330 tttaatccaagactcttcatttccatactccttcat 365  Q
    ||||||||||||||||||||||||||||||||||||    
T  7398183 tttaatccaagactcttcatttccatactccttcat 7398218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 746380 - 746423
Alignment:
Q  323 tgtacagtttaatccaagactcttcatttccatactccttcatg 366  Q
    |||||| |||| |||||||||||| |||||||||||||||||||    
T  746380 tgtacaatttagtccaagactcttgatttccatactccttcatg 746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 2644358 - 2644401
Alignment:
Q  322 gtgtacagtttaatccaagactcttcatttccatactccttcat 365  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||    
T  2644358 gtgtacaatttagtccaagactcttgatttccatactccttcat 2644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 2659148 - 2659191
Alignment:
Q  322 gtgtacagtttaatccaagactcttcatttccatactccttcat 365  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||    
T  2659148 gtgtacaatttagtccaagactcttgatttccatactccttcat 2659191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 23197288 - 23197253
Alignment:
Q  137 attaaaaacaaggtgatatcaaactctcaacacaaa 172  Q
    |||| |||||||||||||||||||||||||||||||    
T  23197288 attagaaacaaggtgatatcaaactctcaacacaaa 23197253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 1438267 - 1438237
Alignment:
Q  137 attaaaaacaaggtgatatcaaactctcaac 167  Q
    |||||||||||||||||||||||||||||||    
T  1438267 attaaaaacaaggtgatatcaaactctcaac 1438237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 1936767 - 1936797
Alignment:
Q  137 attaaaaacaaggtgatatcaaactctcaac 167  Q
    |||||||||||||||||||||||||||||||    
T  1936767 attaaaaacaaggtgatatcaaactctcaac 1936797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 7942539 - 7942497
Alignment:
Q  323 tgtacagtttaatccaagactcttcatttccatactccttcat 365  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||    
T  7942539 tgtacaatttaatccaagactctttattaccatactccttcat 7942497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 23239275 - 23239305
Alignment:
Q  142 aaacaaggtgatatcaaactctcaacacaaa 172  Q
    |||||||||||||||||||||||||||||||    
T  23239275 aaacaaggtgatatcaaactctcaacacaaa 23239305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 1890814 - 1890875
Alignment:
Q  106 aagtgacgtagcaccacatctacgttcagggattaaaaacaaggtgatatcaaactctcaac 167  Q
    ||||||| ||| ||||||||||| |||  | ||||| ||||||| |||||||||||||||||    
T  1890814 aagtgacatagtaccacatctacattctagcattaagaacaaggcgatatcaaactctcaac 1890875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 1897435 - 1897488
Alignment:
Q  114 tagcaccacatctacgttcagggattaaaaacaaggtgatatcaaactctcaac 167  Q
    ||||||||||| ||| |||  | ||||| |||||||||||||||||||||||||    
T  1897435 tagcaccacatttacattctagcattaagaacaaggtgatatcaaactctcaac 1897488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 1906881 - 1906934
Alignment:
Q  114 tagcaccacatctacgttcagggattaaaaacaaggtgatatcaaactctcaac 167  Q
    ||||||||||| ||| |||  | ||||| |||||||||||||||||||||||||    
T  1906881 tagcaccacatttacattctagcattaagaacaaggtgatatcaaactctcaac 1906934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 1930956 - 1930989
Alignment:
Q  137 attaaaaacaaggtgatatcaaactctcaacaca 170  Q
    ||||| ||||||||||||||||||||||||||||    
T  1930956 attaagaacaaggtgatatcaaactctcaacaca 1930989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 7442986 - 7443019
Alignment:
Q  335 tccaagactcttcatttccatactccttcatgat 368  Q
    |||||||||||| |||||||||||||||||||||    
T  7442986 tccaagactcttgatttccatactccttcatgat 7443019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 20019556 - 20019589
Alignment:
Q  137 attaaaaacaaggtgatatcaaactctcaacaca 170  Q
    ||||||||||||||||||||||||||||||||||    
T  20019556 attaaaaacaaggtgatatcaaactctcaacaca 20019589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University