View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_42 (Length: 384)
Name: NF3223_high_42
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 85 - 377
Target Start/End: Original strand, 11804213 - 11804504
Alignment:
| Q |
85 |
tgtaatatattttgggaattgctaaaatgtgccctaagggcacatgttaagatacaacagaattagtgctggtatgcacgttagtaaataacaatattaa |
184 |
Q |
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| T |
11804213 |
tgtaatatattctaggaattgctaaaatgtgccttaagggcacatgttaagatacagcagaattagtgctggtctgtacgt-agtaaataacaatattaa |
11804311 |
T |
|
| Q |
185 |
tccgcacattagttaggataaaaatatttacctcgagtcctttatggaaagcaaagccaggaaggtcaataggcatacagtataaagcagcaaaaacctc |
284 |
Q |
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| T |
11804312 |
ttcgcacattagttaggataaaaatatttaccttgagtcctttatggaaagcaaagccaggaaggtcaataggcatacagtataaagcagcaaaaacatc |
11804411 |
T |
|
| Q |
285 |
agaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatcaaaggaaatgctcttcatctc |
377 |
Q |
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| T |
11804412 |
agaaaaagaattctctattttggtaaggatgtttttattgtaagagcccataataatagaaattatgatatcaaaggaaatgctcttcatctc |
11804504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 20573686 - 20573566
Alignment:
| Q |
257 |
gcatacagtataaagcagcaaaaacctcagaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatc |
356 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20573686 |
gcatacagtataaagcagcaaaaacataagaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatc |
20573587 |
T |
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| Q |
357 |
aaaggaaatgctcttcatctc |
377 |
Q |
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| T |
20573586 |
aaaggaaatgctcttcatctc |
20573566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 11826646 - 11826758
Alignment:
| Q |
220 |
agtcctttatggaaagcaaagccaggaaggtcaataggcatacagtataaagcagcaaaaacctcagaaaaagaattctctattttggtaaggatgtgtt |
319 |
Q |
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|||||||||||||||||||| |||||||||| ||| |||||| || ||| |||| | ||| |||| |||||||| | ||||||| |||| |||||||| |
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| T |
11826646 |
agtcctttatggaaagcaaaaccaggaaggttaatgggcatagagaatagagcaccgtaaatttcagtaaaagaatcccctatttttgtaatgatgtgtt |
11826745 |
T |
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| Q |
320 |
tattgtaagagcc |
332 |
Q |
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|||||||||||| |
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| T |
11826746 |
gattgtaagagcc |
11826758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 365
Target Start/End: Original strand, 11818324 - 11818483
Alignment:
| Q |
206 |
aaatatttacctcgagtcctttatggaaagcaaagccaggaaggtcaataggcatacagtataaagcagcaaaaacctcagaaaaagaattctctatttt |
305 |
Q |
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||||| ||||| |||||||||| | |||||||| |||||||||| ||| |||||| || | ||||||||| | |||| |||||||||| ||||||| |
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| T |
11818324 |
aaatagttaccatgagtcctttacgaaaagcaaaaccaggaaggttaatgggcatagagaacaaagcagcatgcatatcagtaaaagaattccctatttt |
11818423 |
T |
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| Q |
306 |
ggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatcaaaggaaat |
365 |
Q |
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|||| ||| |||| |||||||||||||| | |||| ||| ||||||| ||||||||| |
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| T |
11818424 |
cgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaat |
11818483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 11804165 - 11804210
Alignment:
| Q |
19 |
tgatcaaccccaaaataatctcctaataatgattactagattctaa |
64 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
11804165 |
tgatcaacaccaaaataatctcctaataatgattagtagattctaa |
11804210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 17513381 - 17513500
Alignment:
| Q |
258 |
catacagtataaagcagcaaaaacctcagaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatca |
357 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17513381 |
catacagtataaagcagcaaaaacataagaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatca |
17513480 |
T |
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| Q |
358 |
aaggaaatgctcttcatctc |
377 |
Q |
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|||||||||||||||||||| |
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| T |
17513481 |
aaggaaatgctcttcatctc |
17513500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 17539833 - 17539714
Alignment:
| Q |
258 |
catacagtataaagcagcaaaaacctcagaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatca |
357 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17539833 |
catacagtataaagcagcaaaaacataagaaaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatca |
17539734 |
T |
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| Q |
358 |
aaggaaatgctcttcatctc |
377 |
Q |
| |
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|||||||||||||||||||| |
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| T |
17539733 |
aaggaaatgctcttcatctc |
17539714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 16344079 - 16344051
Alignment:
| Q |
106 |
ctaaaatgtgccctaagggcacatgttaa |
134 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
16344079 |
ctaaaatgtgccctaagggcacatgttaa |
16344051 |
T |
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