View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_44 (Length: 381)
Name: NF3223_high_44
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 5566586 - 5566221
Alignment:
| Q |
1 |
atcacttgtgtatgatagtacttctaatccagaggtaacctatccaacggatatcaaacgtcttgctcaactcgttatataaataagttcaagtcatagg |
100 |
Q |
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| T |
5566586 |
atcacttgtgtatgatagtacttctaatccagaggtaacctatccaacggatatcaaacgtcttgctcaactcgttatataaataagttcaagttatagg |
5566487 |
T |
|
| Q |
101 |
catgaccttaaataagctcaatttatttgcataatagaacgataagttcaacttattacgtgtaagcaataagcaatcataaattgagtagaataaatta |
200 |
Q |
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| T |
5566486 |
catgaccttaaataagctcaatttatttgcataatagaacgataagttcaacttattacgtgtaagcaataagcaatcataaattgagtagaataaatta |
5566387 |
T |
|
| Q |
201 |
ggattgatgtgtcataatccgtaatattgtgttggtggcttaatttcatgttggaattatttctcgttaaatgtaattattaattaatattataatgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5566386 |
ggattgatgtgtcataatccgtaatattgtgttggtggcttaatttgatgttggaattatttctcgttaaatgtaattattaattaatattataatgttt |
5566287 |
T |
|
| Q |
301 |
actagatttgagtctaggttccaatatttcttaatctaacatcgatctatgaactagagtgaataa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5566286 |
actagatttgagtctaggttccaatatttcttaatctaacatcgatttatgaactagagtgaataa |
5566221 |
T |
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