View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_high_46 (Length: 375)
Name: NF3223_high_46
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_46 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 5598228 - 5598580
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5598228 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctccc |
5598327 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5598328 |
tgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctc |
5598427 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5598428 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
5598527 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5598528 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
5598580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 5637047 - 5636695
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5637047 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctccc |
5636948 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5636947 |
tgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctc |
5636848 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5636847 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
5636748 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5636747 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
5636695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 14403564 - 14403217
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14403564 |
aacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgtcttgctcca |
14403465 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
| |||||| ||| |||| ||| ||| ||| || || ||||||||||||||||||||||||||||| || || |||| |||||||||||||||||| || |
|
|
| T |
14403464 |
tatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttc |
14403365 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||| | |
|
|
| T |
14403364 |
atttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgt |
14403265 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14403264 |
ttgattgctttaacaagttctgaccaaacatcatctcctttctcgatc |
14403217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 6313519 - 6313868
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
6313519 |
aacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgtttct |
6313618 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
||||||| || |||| ||||||| || || || ||||||||||||||||||||||||||||| || || |||||||||||||| |||||||| || |
|
|
| T |
6313619 |
tgtgtttaatcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacaaccttgtcatcttc |
6313718 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||| || |||||||| |||||||| | |||||||| | |
|
|
| T |
6313719 |
atttttgttacaacactccattatttcaacaagttcgttcaaacaccatgttgaagaggcatagttttccgagaacaccacaagaaatatagtggattgt |
6313818 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcct |
356 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
6313819 |
ttgattgctttcactagttctacccaaacttcatctcctttctcgatcct |
6313868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 5568991 - 5568642
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| |
|
|
| T |
5568991 |
aacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcttggttctcttgct--- |
5568895 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
||||||| |||| |||| ||||||| ||| || || |||||||| |||||||||||||||||||| || || ||||| ||| ||| |||||| || || |
|
|
| T |
5568894 |
tgtgtttcgccaatgcactgccataactcccggtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaatcacaccaatgttgtcgtcttc |
5568795 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
||||||||||| |||||||||| || ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
5568794 |
atttttgttacggcactccattagttcaacaagttcattcaaacaccatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgt |
5568695 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
359 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5568694 |
ttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctata |
5568642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 5624834 - 5624509
Alignment:
| Q |
23 |
aatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgc |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || | ||||| ||||||||| |||| | ||||||||||||| ||||||| ||||| || |
|
|
| T |
5624834 |
aatgaaaaccagacaaattagcagcttgaaaaagagcagtattccatttttgcatc------tcatggtcgttgccttgctccttgtgtttagccagagc |
5624741 |
T |
|
| Q |
123 |
agcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacac |
222 |
Q |
| |
|
|| ||||||| || || ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
5624740 |
agtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggtagaacacaggaataacaacaacattgtcatcttcatttttgttattacac |
5624641 |
T |
|
| Q |
223 |
tccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||| |||||||||||| |||||||||||| |||| |
|
|
| T |
5624640 |
tccattatttgaacgagttcgttcaaacaccatgttgatgacgcgtagttctccgagaacaccacaagatacagagtggattgtttgattgctttcacaa |
5624541 |
T |
|
| Q |
323 |
gttctgaccaaacttcatctcctttctcgatc |
354 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
5624540 |
gttctgcccaaacttcatctcctttctcgatc |
5624509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 5547835 - 5547495
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | ||||| || | ||||| ||||||||| |||| | ||||||||||| | |
|
|
| T |
5547835 |
aacctgtatgtggttgaatgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc------tcatggtcgttgccttgcttct |
5547742 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
||||||| |||| |||| ||||||| ||| ||||| |||| |||||||||||||||||||||||| || || ||||||||||||||||||||||| || |
|
|
| T |
5547741 |
tgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatcttc |
5547642 |
T |
|
| Q |
207 |
atttttgtta----ccac--actccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtg |
300 |
Q |
| |
|
|||||||||| | | |||||||||| | ||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||| |
|
|
| T |
5547641 |
atttttgttaatgtcgaataactccattatctcaaccagttcgttcaaacaccatgttgaagatgcgtagttcttcgagaacacgacaagaaacaaagtg |
5547542 |
T |
|
| Q |
301 |
gattctttgattgctttaacaagttctgaccaaacttcatctccttt |
347 |
Q |
| |
|
|||| ||| ||||| || |||||||||| |||||||| ||||||||| |
|
|
| T |
5547541 |
gattgtttcattgccttcacaagttctgcccaaacttgatctccttt |
5547495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 13164676 - 13164342
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||||||| ||||| |||||| |||||||||||||||||| ||||||| || || |
|
|
| T |
13164676 |
aacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatctta---------------tggtcaa |
13164592 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
|||||||||||| |||| ||| ||| || || || ||||| || |||||||||||||||||||| || || ||||||||||||||||| |||| || |
|
|
| T |
13164591 |
tgtgttttgccaaagcagtgccgtaactgccagtctgcttccgaacatgtgaagggtcaacatggtagaacacaggaataacaacaacgttatcattttc |
13164492 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
||| ||||| | |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13164491 |
attgttgttgctacactccattatttgaactagttcgttcaaacaccatgttgaaaatgcgtagttctctgagaacacgacaagaaaaagagtggattca |
13164392 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcct |
356 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
13164391 |
ttgattgctttctgaagttctccccaaacttcatctcctttttcgatcct |
13164342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 32632971 - 32632635
Alignment:
| Q |
8 |
acctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccct |
107 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||| | | |
|
|
| T |
32632971 |
acctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatcacag---ccttgcttctt |
32632875 |
T |
|
| Q |
108 |
gtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctca |
207 |
Q |
| |
|
||||||||||| |||| ||| ||| || || |||||||||||| | || ||||||| ||||||||| || ||||||||| |||||||||| |
|
|
| T |
32632874 |
gtgttttgccaacgcagtgccgtaacttccagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataacagcaacgttgtc------- |
32632782 |
T |
|
| Q |
208 |
tttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctt |
307 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || | ||| | |||||||| || |
|
|
| T |
32632781 |
--tttgttactacactccattatttcaacgagttcgttcaaacaccatgttgaagacgcatagttcttcgagaacactaccaaaaagatagtggattgtt |
32632684 |
T |
|
| Q |
308 |
tgattgctttaacaagttctgaccaaacttcatctcctttctcgatcct |
356 |
Q |
| |
|
|||||||||| |||||||| |||||| | |||||||| | |||||| |
|
|
| T |
32632683 |
tgattgctttcgtaagttctgcccaaacatggtctcctttttggatcct |
32632635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 5562451 - 5562327
Alignment:
| Q |
223 |
tccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaa |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| |||||||||| |||||||| ||| ||||| || |||| |
|
|
| T |
5562451 |
tccattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggattgtttcattgccttcacaa |
5562352 |
T |
|
| Q |
323 |
gttctgaccaaacttcatctccttt |
347 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
5562351 |
gttctgcccaaacttcatctccttt |
5562327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 359
Target Start/End: Complemental strand, 5573054 - 5572765
Alignment:
| Q |
51 |
aaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccataataccctgtttgtttccgc |
150 |
Q |
| |
|
||||||| | ||||||||| |||| |||||| ||||||||||| ||||||| | |||||||||||| |||| ||| ||| ||| || || ||||| |
|
|
| T |
5573054 |
aaaaagagctttcttccaaatttgtatcatcatatcatcattg---ccttgcttcttgtgttttgccaaagcagtgccgtaactccccgtctgcttccgg |
5572958 |
T |
|
| Q |
151 |
acgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaac |
250 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| ||||| | |||||||||| || | | |||||||| ||| |||| |||||||| |
|
|
| T |
5572957 |
acgtgtgaagggtcaacatggta-----cgggaataacaacaacattgtctttttcatttttgtgac---atttcattatttcaacaagtttgttcaaac |
5572866 |
T |
|
| Q |
251 |
accatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctc |
350 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||| |||||| || ||||||||||| | ||||||| |||||||||||||||||| | |
|
|
| T |
5572865 |
accatgttgaac--------ttctccgagaacacgacaagaaacaaagtggaatccttgattgctttcaagagttctgtccaaacttcatctcctttttg |
5572774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 12178737 - 12178912
Alignment:
| Q |
181 |
ggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgaga |
280 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || | ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12178737 |
ggaataacaacaacgttgtcttcgtcattttttttgc---acttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgaga |
12178833 |
T |
|
| Q |
281 |
acacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
359 |
Q |
| |
|
||||||| | ||| | || |||| |||| |||||||| | |||||| |||||| || |||||||| ||||| ||||| |
|
|
| T |
12178834 |
acacaaccaaaaataaagcggatgctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctata |
12178912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 12423165 - 12423340
Alignment:
| Q |
181 |
ggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgaga |
280 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || | ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12423165 |
ggaataacaacaacgttgtcttcgtcattttttttgc---acttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgaga |
12423261 |
T |
|
| Q |
281 |
acacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctata |
359 |
Q |
| |
|
||||||| | ||| | || |||| |||| |||||||| | |||||| |||||| || |||||||| ||||| ||||| |
|
|
| T |
12423262 |
acacaaccaaaaataaagcggatgctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctata |
12423340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 12190432 - 12190535
Alignment:
| Q |
181 |
ggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgaga |
280 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || | ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12190432 |
ggaataacaacaacgttgtcttcgtcattttttttgc---acttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgaga |
12190528 |
T |
|
| Q |
281 |
acacaac |
287 |
Q |
| |
|
||||||| |
|
|
| T |
12190529 |
acacaac |
12190535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 12434860 - 12434963
Alignment:
| Q |
181 |
ggaataacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgaga |
280 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || | ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12434860 |
ggaataacaacaacgttgtcttcgtcattttttttgc---acttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgaga |
12434956 |
T |
|
| Q |
281 |
acacaac |
287 |
Q |
| |
|
||||||| |
|
|
| T |
12434957 |
acacaac |
12434963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 5562656 - 5562606
Alignment:
| Q |
24 |
atgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttg |
74 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
5562656 |
atgaaatccagataaattagctgcttcaaaaagagcattcttccatttttg |
5562606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 5562555 - 5562471
Alignment:
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaac |
191 |
Q |
| |
|
||||||||||||| |||| ||| ||| |||||| |||||||| || | ||||||||||||||||| || || ||| ||||||| |
|
|
| T |
5562555 |
tgtgttttgccagcgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtagaacacaggattaacaac |
5562471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 15289 - 15636
Alignment:
| Q |
7 |
aacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgcatcatcttatcatcattgttgccttgctccc |
106 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15289 |
aacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgtcttgctcca |
15388 |
T |
|
| Q |
107 |
tgtgttttgccagtgcagcgccataataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaaccggaataacaacaacgttgtcatcctc |
206 |
Q |
| |
|
| |||||| ||| |||| ||| ||| ||| || || ||||||||||||||||||||||||||||| || || |||| |||||||||||||||||| || |
|
|
| T |
15389 |
tatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttc |
15488 |
T |
|
| Q |
207 |
atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct |
306 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||| | |
|
|
| T |
15489 |
atttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgt |
15588 |
T |
|
| Q |
307 |
ttgattgctttaacaagttctgaccaaacttcatctcctttctcgatc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15589 |
ttgattgctttaacaagttctgaccaaacatcatctcctttctcgatc |
15636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 19496001 - 19496108
Alignment:
| Q |
219 |
acactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgcttta |
318 |
Q |
| |
|
||||| |||||||| ||| ||||| | ||||||||| | ||| || ||||||||||||||||| || ||||| ||||| ||||| || |||||||| |
|
|
| T |
19496001 |
acacttcattatttcaacaagttcatccaaacaccaactggaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttc |
19496100 |
T |
|
| Q |
319 |
acaagttc |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
19496101 |
acaagttc |
19496108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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