View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_48 (Length: 372)
Name: NF3223_high_48
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 37 - 320
Target Start/End: Original strand, 24119384 - 24119662
Alignment:
| Q |
37 |
acatgcattgttaacctagcaaatgtcatacaacaatatatgaaagtgtagagcactaattaaactctatgcaaattgttgaacatgcatgttaatatga |
136 |
Q |
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| T |
24119384 |
acatgcattgttaacctagcaaatgtcatacaacaatatatgaaagtgtagagcactaattaaactctatgcaaattgttgaacatgcatgttaatatga |
24119483 |
T |
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| Q |
137 |
ttttgtcatgtaagtgtctaagtaattaatatgacaaaatgtgacaaatgatgcattaagcatttggtattgatttaattaattggttttgttnnnnnnn |
236 |
Q |
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| T |
24119484 |
ttttgtcatgtaagtgtctaagtaattaatatgacaaaatgtgacaaatgatgcattaagcatttggtattgat----ttaattggttttgtt-aaaaaa |
24119578 |
T |
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| Q |
237 |
gtacatcattctctctgttgttttatttttagcaaatattttgctacatatatagtagaattgttattaaatataaattgagaa |
320 |
Q |
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| T |
24119579 |
gtacatcattctctctgttgttttatttttagcaaatattttgctacatatatagtagaattgttattaaatataaattcagaa |
24119662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 24119866 - 24119921
Alignment:
| Q |
307 |
atataaattgagaaaagnnnnnnngttgcccatgccttatgcttcgtgcccctatg |
362 |
Q |
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| T |
24119866 |
atataaattgagaaaagaaaaaaagttgcccatgccttatgcttcgtgcccctatg |
24119921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 47141895 - 47141865
Alignment:
| Q |
19 |
ataactcagttgacagggacatgcattgtta |
49 |
Q |
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| T |
47141895 |
ataactcagttgacagggacatgcattgtta |
47141865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 17431383 - 17431413
Alignment:
| Q |
19 |
ataactcagttgacagggacatgcattgtta |
49 |
Q |
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| T |
17431383 |
ataactcagttgacagggacatgcattgtta |
17431413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 3461813 - 3461783
Alignment:
| Q |
19 |
ataactcagttgacagggacatgcattgtta |
49 |
Q |
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| T |
3461813 |
ataactcagttgacagggacatgcattgtta |
3461783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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