View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_51 (Length: 364)
Name: NF3223_high_51
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 44934887 - 44934669
Alignment:
| Q |
13 |
catcataggaagtttagacttttgactttagacatgtttaggggacaaggacaatgctagcagtctttgcttaagagtcgaaactagtttaagtttccct |
112 |
Q |
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| T |
44934887 |
catcataggaagtttagacttttgactttagacatgtttaggggacaaggacaatgctagcagtctttgcttaagagtcgaaactagtttaagtttccct |
44934788 |
T |
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| Q |
113 |
caacagcaaaaaagaaaccgaggttacaaaaaagcaaccatcagttgtttcattttcatcgttaaaaacgttgtttatt-aattggtcgaaaattaggag |
211 |
Q |
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| T |
44934787 |
caacagcaaaaaaggaactggggttacaaaaaagcaaccatcagttgtttcattttcatcgttaaaaacgttgtttattaaattggtcgaaaattaggag |
44934688 |
T |
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| Q |
212 |
tctattatttgacaaaaac |
230 |
Q |
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||||||||||||||||||| |
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| T |
44934687 |
tctattatttgacaaaaac |
44934669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 260 - 349
Target Start/End: Complemental strand, 44934639 - 44934550
Alignment:
| Q |
260 |
gtgttaggtttacttcataacattagaaaaataacttctaaattgagtcagtgtgttggagacaaagtgcaagctaagtataatgaaaat |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44934639 |
gtgttaggtttacttcataacattagaaaaataacttctaaattgagtcagtgtgttggagacaaagtgcaagctaagtataatgaaaat |
44934550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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