View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_52 (Length: 358)

Name: NF3223_high_52
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_52
NF3223_high_52
[»] chr2 (10 HSPs)
chr2 (1-335)||(8368245-8368579)
chr2 (1-335)||(8400831-8401165)
chr2 (1-335)||(8422408-8422742)
chr2 (223-333)||(8431135-8431245)
chr2 (223-332)||(8411997-8412106)
chr2 (223-332)||(8417215-8417324)
chr2 (223-332)||(8434095-8434204)
chr2 (247-333)||(8375924-8376010)
chr2 (247-333)||(8439093-8439179)
chr2 (230-266)||(8403987-8404023)
[»] chr4 (3 HSPs)
chr4 (39-101)||(55331029-55331091)
chr4 (39-99)||(55336466-55336526)
chr4 (223-332)||(55336242-55336351)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 8368579 - 8368245
Alignment:
Q  1 ataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368579 ataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg 8368480  T
Q  101 caaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga 200  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368479 caaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga 8368380  T
Q  201 aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8368379 aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggct 8368280  T
Q  301 attgcaggaccattactcactggaattgcagctgt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  8368279 attgcaggaccattactcactggaattgcagctgt 8368245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 8400831 - 8401165
Alignment:
Q  1 ataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400831 ataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg 8400930  T
Q  101 caaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga 200  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400931 caaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga 8401030  T
Q  201 aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8401031 aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggct 8401130  T
Q  301 attgcaggaccattactcactggaattgcagctgt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  8401131 attgcaggaccattactcactggaattgcagctgt 8401165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 8422408 - 8422742
Alignment:
Q  1 ataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422408 ataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg 8422507  T
Q  101 caaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga 200  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422508 caaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga 8422607  T
Q  201 aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8422608 aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggct 8422707  T
Q  301 attgcaggaccattactcactggaattgcagctgt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  8422708 attgcaggaccattactcactggaattgcagctgt 8422742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 8431245 - 8431135
Alignment:
Q  223 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 322  Q
    ||||| || |||||||||||  | ||||||||||| ||| | |||||| | | ||||||| |||| ||||  ||||| |||||||| ||||||||| | |    
T  8431245 gaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattactctcag 8431146  T
Q  323 gaattgcagct 333  Q
    |||||||||||    
T  8431145 gaattgcagct 8431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 8412106 - 8411997
Alignment:
Q  223 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 322  Q
    ||||| || ||||||||||||   ||||||||||| ||| | |||||| | |  |||||| |||| ||||  ||||| |||||||| ||||||||||| |    
T  8412106 gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag 8412007  T
Q  323 gaattgcagc 332  Q
    ||||||||||    
T  8412006 gaattgcagc 8411997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 8417324 - 8417215
Alignment:
Q  223 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 322  Q
    ||||| || ||||||||||||   ||||||||||| ||| | |||||| | |  |||||| |||| ||||  ||||| |||||||| ||||||||||| |    
T  8417324 gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag 8417225  T
Q  323 gaattgcagc 332  Q
    ||||||||||    
T  8417224 gaattgcagc 8417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 8434204 - 8434095
Alignment:
Q  223 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 322  Q
    ||||| || ||||||||||||   ||||||||||| ||| | |||||| | |  |||||| |||| ||||  ||||| |||||||| ||||||||||| |    
T  8434204 gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag 8434105  T
Q  323 gaattgcagc 332  Q
    ||||||||||    
T  8434104 gaattgcagc 8434095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 8375924 - 8376010
Alignment:
Q  247 gaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactggaattgcagct 333  Q
    ||||||||||| ||| | |||||| | | ||||||| |||| ||||  ||||| |||||||| ||||| ||||| ||||||||||||    
T  8375924 gaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagct 8376010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 8439179 - 8439093
Alignment:
Q  247 gaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactggaattgcagct 333  Q
    ||||||||||| ||| | |||||| | | ||||||| |||| ||||  ||||| |||||||| ||||| ||||| ||||||||||||    
T  8439179 gaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagct 8439093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 8404023 - 8403987
Alignment:
Q  230 tgaagagaaaagatatggaagattatgagagattagg 266  Q
    |||||||||||||||| || |||||||||||||||||    
T  8404023 tgaagagaaaagatattgaggattatgagagattagg 8403987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 55331091 - 55331029
Alignment:
Q  39 agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 101  Q
    |||||||||||||||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  55331091 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 55331029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 55336526 - 55336466
Alignment:
Q  39 agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacct 99  Q
    |||||||||||||||| ||||||||| |||| ||||||| || |||  |||||||||||||    
T  55336526 agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct 55336466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 55336351 - 55336242
Alignment:
Q  223 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 322  Q
    |||||| | ||||| ||||| || ||||| ||||||||| | |||||  | | ||||||||| || ||||   |||| || ||||| |||||||||||||    
T  55336351 gaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactg 55336252  T
Q  323 gaattgcagc 332  Q
    ||||||||||    
T  55336251 gaattgcagc 55336242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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