View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_56 (Length: 346)
Name: NF3223_high_56
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 17453104 - 17453424
Alignment:
| Q |
12 |
atcatcacattggtcaaaaacaaccatacaagtgagttgaacattgcattataactcaaaccctaagtcattgattttatatgtttatgtgttctttcag |
111 |
Q |
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| T |
17453104 |
atcatcatattggccaaaaacaactatacaggtgagttgaacattacattataactcaaaccctaagtcattgagtttatacgtttatgtgttctttcag |
17453203 |
T |
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| Q |
112 |
ttataaattgcttaacattaattttttcatccaagtgagagacttttaacacatggtaaacaacagaatcacctgaatgttccagtttttggtgttactg |
211 |
Q |
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| T |
17453204 |
ttataaattgcttaacattaattttttcatccaagtgagagacttttaacacatggtaaacaacagaatcacgtgaatgttccagtttttggtgttactg |
17453303 |
T |
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| Q |
212 |
caaattgcaattatttggcaacccggtttactgacatttagctatttatacaaaagaaaacaactgaaagtttcttagggtggttgaaacgattaatttg |
311 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17453304 |
caaattgcaattatttggcaccccggtttactgacatttagctatttatacaaaagaaaacaactgaaagtttcttagggtggttgaaacgattaattag |
17453403 |
T |
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| Q |
312 |
caatacattctagacaaaatt |
332 |
Q |
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||||||||| |||| |||||| |
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| T |
17453404 |
caatacattttagataaaatt |
17453424 |
T |
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