View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_59 (Length: 341)

Name: NF3223_high_59
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_59
NF3223_high_59
[»] chr2 (6 HSPs)
chr2 (29-303)||(32445189-32445463)
chr2 (29-145)||(32438445-32438561)
chr2 (187-226)||(28037314-28037353)
chr2 (207-297)||(11985087-11985177)
chr2 (189-267)||(27477336-27477414)
chr2 (185-241)||(9374374-9374430)
[»] chr5 (2 HSPs)
chr5 (192-319)||(11192502-11192629)
chr5 (209-314)||(28235723-28235831)
[»] chr3 (1 HSPs)
chr3 (215-319)||(30293348-30293451)
[»] chr7 (1 HSPs)
chr7 (184-314)||(3861076-3861206)
[»] chr1 (2 HSPs)
chr1 (187-267)||(6017709-6017789)
chr1 (187-229)||(799665-799707)
[»] chr6 (1 HSPs)
chr6 (171-226)||(25337790-25337845)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 32445189 - 32445463
Alignment:
Q  29 tttccaaaaagaaaacagagaagaaattcacatgggcatactataattggcttcaaccaacgtgcagtttgttcggttatatattccttaccggaatcca 128  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32445189 tttccaaaaagaaaacaaagaagaaattcacatgggcatactataattggcttcaactaacgtgcagtttgttcggttatatattccttaccggaatcca 32445288  T
Q  129 aatgtcgttattatagattattttatttattac----catgttaactcattcaaacaagtagagtacatcatttaacattattaaaaatgtaaatgatga 224  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||    |||||| | ||||||| |||||||||||    
T  32445289 aatgtcgttattatagattattttatttattacaaaacatgttaactcattcaaataagtagagtaca----ttaacactgttaaaaacgtaaatgatga 32445384  T
Q  225 atatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataagataaaattaaag 303  Q
    ||||||||| ||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32445385 atatgccaacaaactcactacatccaagttaataacatataactgcaaaactcttacaaataataagataaaattaaag 32445463  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 32438445 - 32438561
Alignment:
Q  29 tttccaaaaagaaaacagagaagaaattcacatgggcatactataattggcttcaaccaacgtgcagtttgttcggttatatattccttaccggaatcca 128  Q
    ||||||||||||||||| |||||||| |||||||| ||| |||||| ||||| |||| ||| ||| |||| ||||| |||||||||| ||||||||||||    
T  32438445 tttccaaaaagaaaacaaagaagaaaatcacatggtcatgctataaatggctccaactaacatgctgttttttcggctatatattccctaccggaatcca 32438544  T
Q  129 aatgtcgttattataga 145  Q
    | ||||||| |||||||    
T  32438545 actgtcgttcttataga 32438561  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 28037353 - 28037314
Alignment:
Q  187 agtacatcatttaacattattaaaaatgtaaatgatgaat 226  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  28037353 agtacatcatttaacatcgttaaaaatgtaaatgatgaat 28037314  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 11985087 - 11985177
Alignment:
Q  207 taaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataagataaaa 297  Q
    |||||| ||||||||||||| ||| || |||||||  | |||||||||||||  ||| ||| ||||||  | ||||||||||| |||||||    
T  11985087 taaaaacgtaaatgatgaatttgcgaacaaattcacaacatccaagttaataggatacaacagcaaaatgcctacaaataatatgataaaa 11985177  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 27477414 - 27477336
Alignment:
Q  189 tacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataac 267  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| || | | |||  | ||||||||||||| ||| ||||    
T  27477414 tacatcattcaacattgttaaaaatgtaaatgatgaatctgcgaacatactcacaacatccaagttaatagtatttaac 27477336  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 9374374 - 9374430
Alignment:
Q  185 agagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattca 241  Q
    ||||||||||||| ||||    |||||| ||||||||||||||||| ||||||||||    
T  9374374 agagtacatcattcaacacggctaaaaacgtaaatgatgaatatgcgaaaaaattca 9374430  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 11192629 - 11192502
Alignment:
Q  192 atcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataag 291  Q
    ||||||||| ||  ||||||| ||||||||| ||  |||||| ||||| |  | ||| |||||||||| ||| |||  |||||  ||||||||||||| |    
T  11192629 atcatttaatatcgttaaaaacgtaaatgataaacctgccaacaaatttacaacatcaaagttaataacatacaacgacaaaatgcttacaaataatacg 11192530  T
Q  292 ataaaattaaagggatcgaaatactcat 319  Q
    ||||| |||||| |||||||||||||||    
T  11192529 ataaatttaaagtgatcgaaatactcat 11192502  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 28235831 - 28235723
Alignment:
Q  209 aaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaata--atatataactgcaaaactcttacaaata-ataagataaaattaaaggg 305  Q
    |||||||||||||||||| ||| || ||| |||  | |||||||||||||  ||||||||| ||| ||  | |||||| | ||| ||||||||||||| |    
T  28235831 aaaatgtaaatgatgaatctgcgaacaaactcacaacatccaagttaatagcatatataacggcataatgcctacaaaaatatatgataaaattaaagtg 28235732  T
Q  306 atcgaaata 314  Q
    |||||||||    
T  28235731 atcgaaata 28235723  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 30293348 - 30293451
Alignment:
Q  215 taaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataagataaaattaaagggatcgaaata 314  Q
    |||| ||||||| ||| || ||| |||| | |||||||||||||  ||||||| ||||||| ||||||||||||| |||||| |||| | || |||||||    
T  30293348 taaaagatgaatctgcaaataaactcatgacatccaagttaatagcatataac-gcaaaacacttacaaataatatgataaagttaatgtgaccgaaata 30293446  T
Q  315 ctcat 319  Q
    |||||    
T  30293447 ctcat 30293451  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 3861206 - 3861076
Alignment:
Q  184 tagagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaa 283  Q
    ||||||||  |||| ||||| | |||||| |||||| |||||||||  || ||| |||| | ||||||||| |||| ||||||  ||||||  | ||||     
T  3861206 tagagtaccccattcaacatcactaaaaacgtaaattatgaatatgtgaacaaactcataacatccaagttgataacatataatggcaaaaagcctacac 3861107  T
Q  284 ataataagataaaattaaagggatcgaaata 314  Q
    |||||| ||||||||||||| || |||||||    
T  3861106 ataatatgataaaattaaagtgaccgaaata 3861076  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 6017789 - 6017709
Alignment:
Q  187 agtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataac 267  Q
    |||||||| || ||| |||||||||||  ||||||||||| ||| || |||||||  | ||||||||||||| ||||||||    
T  6017789 agtacatctttcaacgttattaaaaataaaaatgatgaatctgcaaataaattcacaacatccaagttaatagtatataac 6017709  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 799665 - 799707
Alignment:
Q  187 agtacatcatttaacattattaaaaatgtaaatgatgaatatg 229  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||    
T  799665 agtacatcattcaacatcattaaaaacgtaaatgatgaatatg 799707  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 25337845 - 25337790
Alignment:
Q  171 tcattcaaacaagtagagtacatcatttaacattattaaaaatgtaaatgatgaat 226  Q
    |||||||||  | ||||||||||||||||||| || ||||||| ||||||||||||    
T  25337845 tcattcaaattaatagagtacatcatttaacactactaaaaatataaatgatgaat 25337790  T

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