View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_60 (Length: 339)

Name: NF3223_high_60
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_60
NF3223_high_60
[»] scaffold1246 (1 HSPs)
scaffold1246 (1-337)||(621-957)


Alignment Details
Target: scaffold1246 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold1246
Description:

Target: scaffold1246; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 621 - 957
Alignment:
Q  1 ttgtatcgtctctttattattttcatcgacgttatcatcaagcatcttctctatgccattgtcacttcctttcatgtgttgaaattcagaatcttttgac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  621 ttgtatagtctctttattattttcatcgacgttatcatcaagcatcttctctatgccattgtcacttcctttcatgtgttgaaattcagaatcttttgac 720  T
Q  101 tctttttggcttgtctcaccaacactactagaaacatgatcaatttcacctttctctagctctgattttcttttatcattctcttgttccttgacttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||  ||||||||||||||||||||    
T  721 tctttttggcttgtctcaccaacactactagaaacatgatcaatttcacatttatctagctctgatattcttttatcaaactcttgttccttgacttcct 820  T
Q  201 caaccttaagaccaaaaatcccttttaccaactttggcatgtaaatattcaaaatccattcctcttcattgtaatttcctttgatcttatccaaattcac 300  Q
    ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821 caaacttaagaccaaaaatcccttttacaaaatttggcatgtaaatattcaaaatccattcctcttcattgtaatttcctttgatcttatccaaattcac 920  T
Q  301 accataaggaattttgaaaaccttattgaagcctttg 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  921 accataaggaattttgaaaaccttattgaagcctttg 957  T

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