View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_63 (Length: 334)
Name: NF3223_high_63
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_63 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 53492867 - 53492534
Alignment:
| Q |
1 |
agaactgctacttccctatgtttgtgctagactgccatttgaaaaaggagaaggcccataatgacggttttaaacaagtggtgagagtttttaagtttgt |
100 |
Q |
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| T |
53492867 |
agaactgctacttccctatgtttgtgctagactgccatttgaaaaaggagaaggcccataatgaaggttttaaacaagtggtgagagtttttaagtttgt |
53492768 |
T |
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| Q |
101 |
ttggtttgctcctaaatatttgaaaatcattgcattattaaatcatttgttgcttcctaattattttatcaatgtttctcattttactgatgttggtttt |
200 |
Q |
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| T |
53492767 |
ttggtttgctcctaaatatttgaaaatcattgcattattaaatcatttgttgcttcctaattattttatcaatgtttctcattttactgatgttggtttt |
53492668 |
T |
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| Q |
201 |
gtggtaaaatgacttctgttaacaattttctttatagtaatctatgcaacttcgttgcttcccttgaggatattattagtatttttctgattatcttgct |
300 |
Q |
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| T |
53492667 |
gtggtaaaatgacttctgttaacaattttctttatagtaatctatgcaacttcgttgcttcccttgaggacattattagtatttttctgattatcttgct |
53492568 |
T |
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| Q |
301 |
tgttttctaggttgcttgggtaacaaagtctgga |
334 |
Q |
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| T |
53492567 |
tgttttctaggttgcttgggtaacaaagtctgga |
53492534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 101 - 334
Target Start/End: Complemental strand, 53500687 - 53500454
Alignment:
| Q |
101 |
ttggtttgctcctaaatatttgaaaatcattgcattattaaatcatttgttgcttcctaattattttatcaatgtttctcattttactgatgttggtttt |
200 |
Q |
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| T |
53500687 |
ttggtttgctcctaaatatttgaaaatcattgcattattaaatcatttgttggatcctaattattttatcaatgtttctcattttactaatgatggtttc |
53500588 |
T |
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| Q |
201 |
gtggtaaaatgacttctgttaacaattttctttatagtaatctatgcaacttcgttgcttcccttgaggatattattagtatttttctgattatcttgct |
300 |
Q |
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| T |
53500587 |
gtgttaaaatgaccgcttttaaggattttctttataataatctatacaacttcattgcttcccaaaaggacattattagtatttttctgattatcttgct |
53500488 |
T |
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| Q |
301 |
tgttttctaggttgcttgggtaacaaagtctgga |
334 |
Q |
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| T |
53500487 |
tgttttctaggttgcttgggtaacaaagtctgga |
53500454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 101 - 334
Target Start/End: Complemental strand, 16071880 - 16071649
Alignment:
| Q |
101 |
ttggtttgctcctaaatatttgaaaatcattgcattattaaatcatttgttgcttcctaattattttatcaatgtttctcattttactgatgttggtttt |
200 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || | ||||| |
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| T |
16071880 |
ttggttttctcttaaatatttgaaaatcattgcattattaaatcatttgtttgttcctaattattttatcaatgtttctcatttt--cgttgat-gtttt |
16071784 |
T |
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| Q |
201 |
gtggtaaaatgacttctgttaacaattttctttatagtaatctatgcaacttcgttgcttcccttgaggatattattagtatttttctgattatct-tgc |
299 |
Q |
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||| | |||||||| || ||||| |||||||||||| || ||||| || ||| |||||| |||||||||||||| |||||||||||||||| | || |
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| T |
16071783 |
gtgttgaaatgactgcttttaacgattttctttataatagtctatataaattcattgctttttttgaggatattatttgtatttttctgattatatatgt |
16071684 |
T |
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| Q |
300 |
ttgttttctaggttgcttgggtaacaaagtctgga |
334 |
Q |
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| T |
16071683 |
tcgttttctaggttgcttgggtaacaaagtctgga |
16071649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 16072017 - 16071916
Alignment:
| Q |
5 |
ctgctacttccctatgtttgtgctagactgccatttgaaaaaggagaaggcccataatgacggttttaaacaagtggtgagagtttttaagtttgtttgg |
104 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||| || |
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| T |
16072017 |
ctgctacttccctatgtttgtgctagaatgtcatttgaaaaaggagaaggcccattatgacggttttaagccagaggtgagagtttttaagtttgttggg |
16071918 |
T |
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| Q |
105 |
tt |
106 |
Q |
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|| |
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| T |
16071917 |
tt |
16071916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 53500818 - 53500713
Alignment:
| Q |
1 |
agaactgctacttccctatgtttgtgctagactgccatttgaaaaaggagaaggcccataatgacggttttaaacaagtggtgagagtttttaagtttgt |
100 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||| ||| |
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| T |
53500818 |
agaactgctacttccccatgtttgtgctagactctcatttgaaaaaggaagaggctcataacagtggttttaaacaagaggtgagagtttttaagtatgt |
53500719 |
T |
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| Q |
101 |
ttggtt |
106 |
Q |
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| T |
53500718 |
taggtt |
53500713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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