View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_69 (Length: 322)
Name: NF3223_high_69
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_69 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 31133954 - 31134253
Alignment:
| Q |
6 |
gtatcggtgttggtgctggtgctggtgccggggataatataattgagctattgtcagcagtggcattgggacaatgtgtaccattactgcaaactataca |
105 |
Q |
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| T |
31133954 |
gtatcggtgttggtgttggtgctggtgccgaggataatgtaattgagctattgtcagcagtggcattgggacaatgtgtaccattactgcaaactatata |
31134053 |
T |
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| Q |
106 |
cagcagaattttgttcatattagtaaaacaaatattctgacaaaaataattcctgcatatgaatccaaagcctaggtttgcacttttatt-ttctatacg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
31134054 |
cagcagaattttgttcatattagtaaaacaaatattctgacaaaaataattcctgcatatgaattcaaagcctaggtttgcacttttattattctatacg |
31134153 |
T |
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| Q |
205 |
tgggaaaactaaatctgagtnnnnnnnnncctatagaagggtgaatatacataccaactttaagtctaggtgatataggactagggggtaacaacgatga |
304 |
Q |
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|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31134154 |
tgggaaaactaaatctgagt----aaaaacctgtagatgggtgaatatacataccaactttaagtctaggtgatataggactaggcagtaacaacgatga |
31134249 |
T |
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