View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_high_72 (Length: 310)
Name: NF3223_high_72
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_72 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 12933842 - 12933533
Alignment:
| Q |
1 |
atctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatcttaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933842 |
atctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatcttaaca |
12933743 |
T |
|
| Q |
101 |
actggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933742 |
actggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttct |
12933643 |
T |
|
| Q |
201 |
tgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933642 |
tgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttg |
12933543 |
T |
|
| Q |
301 |
cattgctttc |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
12933542 |
cattgctttc |
12933533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 14177112 - 14176803
Alignment:
| Q |
1 |
atctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatcttaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177112 |
atctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatcttaaca |
14177013 |
T |
|
| Q |
101 |
actggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177012 |
actggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttct |
14176913 |
T |
|
| Q |
201 |
tgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176912 |
tgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttg |
14176813 |
T |
|
| Q |
301 |
cattgctttc |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
14176812 |
cattgctttc |
14176803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 28608763 - 28609073
Alignment:
| Q |
1 |
atctccatgaagaaatgcagtctttacgtccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatcttaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608763 |
atctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatcttaaca |
28608862 |
T |
|
| Q |
101 |
actggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608863 |
actggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttct |
28608962 |
T |
|
| Q |
201 |
tgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatca-tttttctgcaatgaatccatctcttctt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28608963 |
tgagcttgaacacccatttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatcattttttctgcaatgaatccatctcttctt |
28609062 |
T |
|
| Q |
300 |
gcattgctttc |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
28609063 |
gcattgctttc |
28609073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 15299616 - 15299323
Alignment:
| Q |
19 |
agtctttacgtccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatcttaacaactggagaga--agattt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15299616 |
agtctttacgtccatttgttcaagctccaaacccaagctagcaaccaatccgagtataactcgaattgaactcatcttaacaactggagagagaagattt |
15299517 |
T |
|
| Q |
117 |
catcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacaccca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15299516 |
catcaaaatctattcctcgcttttgtccaaaaccttttacgactaagagagctttgtatttcactagcttgtcactatctttcttgagcttgaacaccca |
15299417 |
T |
|
| Q |
217 |
tttattcttcaaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttc |
310 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
15299416 |
tttattctttaaggcttttctgatttcaggaagcttcacaagttcataagtatcatttttctgcaaggaatccatctcttcttacattgctttc |
15299323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University