View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_high_74 (Length: 306)
Name: NF3223_high_74
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 33710468 - 33710757
Alignment:
| Q |
1 |
aactataccaactaccaaactcaatgcagaaccaattaacacaaacagaattcccattgcacaagttaacaatggactcaaccaaaatgctgccctgagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710468 |
aactataccaactaccaaactcaatgcagaaccaattaacacaaacagaattcccattgcacacgttaacaatggactcaaccaaaatgctgccctgagc |
33710567 |
T |
|
| Q |
101 |
gccttttccgggtggcttgcaatgatccattgccacatcaaaccaagaattcctccacatactgttgatgctagaagtggagggtaccatttctcagggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710568 |
gccttttccgggtggcttgcaatgatccattgccacatcaaaccaagaattcctccacatactgttgatgctagaagtggagggtaccatttctcagggt |
33710667 |
T |
|
| Q |
201 |
ggaaatggtgggttgaatagtctaagacaagaccatagacggtgatgaaaatcaccaagattgaaatcagaaccagatacaagtagaaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710668 |
ggaaatggtgggttgaatagtctaagacaagaccatagacggtgatgaaaatcaccaagattgaaatcagaaccagatacaagtagaaaa |
33710757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University