View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_75 (Length: 300)
Name: NF3223_high_75
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 241722 - 241464
Alignment:
| Q |
26 |
ccaccagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcag |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241722 |
ccaccagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcag |
241623 |
T |
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| Q |
126 |
ccttatcatcctgataatcacgtgatccaataagtatgatatctccgttagcaatccaaaccttcttgtgcatcttaccacggatatgacagagacgttt |
225 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
241622 |
ccttatcatcctgataatcacgtaatccaataagtattatatctccgttagcaatccaaaccttcttgtgcatcttaccccggatatgacagagacgttt |
241523 |
T |
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| Q |
226 |
tctgatgttgttatcgttgtcgatgcaattcgcttccaaccgtccgtttccaagcatac |
284 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241522 |
tctgatgttgttctcgttgtcgatgcaattcgcttccaaccgtccgtttccaagcatac |
241464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 10520504 - 10520700
Alignment:
| Q |
26 |
ccaccagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcag |
125 |
Q |
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|||||| |||| |||||||||||||| | | ||||||| ||| ||| |||||||| | || ||||||||||||||||| ||||| |||||||||| |
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| T |
10520504 |
ccaccaccaattccttcattaagcctcacactatccggaagctcgctatacgccttcaacaatctggcctcatccggcatatacttcaagatcacatcag |
10520603 |
T |
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| Q |
126 |
ccttatcatcctgataatcacgtgatccaataagtatgatatctccgttagcaatccaaaccttcttgtgcatcttaccacggatatgacagagacg |
222 |
Q |
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|||||||||||||||||||||| | |||| ||| || ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10520604 |
ccttatcatcctgataatcacgcaacccaacaagaataatatccccagcagcaatccaaaccttcttgtgcatctttccacggatatgacagagacg |
10520700 |
T |
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