View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_78 (Length: 281)
Name: NF3223_high_78
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_78 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 35991248 - 35991513
Alignment:
| Q |
1 |
acattgatcaagtttgctgatatgttgatggaccattcattaacacaggtctgcagagatccaaggtggggacgttgctatgaaagctacagtgaggatc |
100 |
Q |
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| T |
35991248 |
acattgatcaagtttgctgatatgttgatggaccattcattaacacaggtctgcagagatccaaggtggggacgttgctatgaaagctacagtgaggatc |
35991347 |
T |
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| Q |
101 |
ctaagattgttaaaactatgactgaaattatacctggtcttcaaggagatattcctggcaattccagaaagggaactccctttgttgctggaaagtaagt |
200 |
Q |
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| T |
35991348 |
ctaagattgttaaaactatgactgaaattatacctggtcttcaaggagatattcctggcaattccagaaagggaactccctttgttgctggaaagtaagt |
35991447 |
T |
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| Q |
201 |
tttgtttcaagatttgttttgaaaagaaaattttatggtcataagtcttgtagttgtatggttggt |
266 |
Q |
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| T |
35991448 |
tttgtttcaagctttgttttgaaaagaaaattttatggtcataagtcttgtagttgtatggttggt |
35991513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 33356357 - 33356278
Alignment:
| Q |
55 |
agagatccaaggtggggacgttgctatgaaagctacagtgaggatcctaagattgttaaaactatgactgaaattatacc |
134 |
Q |
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||||||||||| ||||| || || || |||||||||||||| |||||||| | ||| || ||||||||||||| ||||| |
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| T |
33356357 |
agagatccaagatggggtcggtgttacgaaagctacagtgaagatcctaaagtagttcaagctatgactgaaatcatacc |
33356278 |
T |
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