View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_8 (Length: 558)
Name: NF3223_high_8
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 49812377 - 49812901
Alignment:
| Q |
8 |
cgaagaaaatcccttgctggtggaaaaaacatgaaaaagcatgcaacaccagctgtgagcagaagctgaatggaaacaatgatgtaaactttacggatga |
107 |
Q |
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| T |
49812377 |
cgaacaaaatcccttgctggtggaaaaaacatgaaaaagcatgcaacaccagctgtgagcagaagctgaatggaaacaatgatgtaaactttacggatga |
49812476 |
T |
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| Q |
108 |
aaccccatcggagctcaggtgactctatcatcgacggatacaggctgtcgccatgtgcgtgggaaaacccagcctcaatgtcacccttacccatgccggt |
207 |
Q |
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| T |
49812477 |
aaccccatcggagctcaggtgactctatcatcgacggatacaggttgtcgccatgtgcgtgggaaaatccagcctcaatgtcacccttacccatgccggt |
49812576 |
T |
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| Q |
208 |
gataaacacaaacaaacaacctccaaaacaaagaatatgtatgatcaatgaagaattgaattggatatgcttttatatttcaatggcttaatttggttgt |
307 |
Q |
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| T |
49812577 |
gataaacacaaacaaacaacctccaaaacaaagaatatgtatgatcaatgaagaattgaattggatatgcttttatatttcaatggc----------tgt |
49812666 |
T |
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| Q |
308 |
ttattcggttgaaatagcgaatcttgtcttttttattttaaaccgaggcccatattgtaatgcattgtatatatagaaattgtttcgtttaattttggca |
407 |
Q |
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| T |
49812667 |
ttattcggttgaaataacgaatcttgtcttttttattttaaaccgaggcccatattgtaatgcattgtatatatagaaattgtttcgtttaattttggca |
49812766 |
T |
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| Q |
408 |
tatgcgtgtgtgtgatttttgttgttcatttcgctgtcttcaaacgagcaccattaatattatgtctcaaatcataacgtcatatgacacctaccactta |
507 |
Q |
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| T |
49812767 |
tatgcgtgtgtgtgatttttgttgttcattttgctgtcttcaaacgagcaccgttaatattatgtctcaaatcataacgtcatatgacacctaccactta |
49812866 |
T |
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| Q |
508 |
tttaccttatatatacagtacaaaataataataat |
542 |
Q |
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| T |
49812867 |
tttaccttatatatacagtacaaaataataataat |
49812901 |
T |
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