View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_82 (Length: 274)
Name: NF3223_high_82
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_82 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 2796577 - 2796332
Alignment:
| Q |
13 |
ttaattcattttctcaaattattaatggtgttgaagtgtcaatttcatggtcgggtccattttgaggcttcatatttgaataaaccaaataataacacca |
112 |
Q |
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| T |
2796577 |
ttaattcattttctcaaattattaatggtgttgaagtgtcaatgtcatggtcgggtccattttgaggcttcatatttgaataaaccaaataataacacca |
2796478 |
T |
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| Q |
113 |
acatttgtttagttaacataataataaaataataagagtgtgataaattaaagattgagatgcttaccaaatcagccctcctctcctccaatgttatatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2796477 |
acatttgtttagttaacataataataaaataataagagtgtgataaattaaagattgagatgcttaccaaatcagccctcctctcctccaatgttatatc |
2796378 |
T |
|
| Q |
213 |
ccgcataacaacatccggtgctaaaccatacagagaaggattcctt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2796377 |
ccgcataacaacatccggtgctaaaccatacagagaaggattcctt |
2796332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 29263949 - 29263891
Alignment:
| Q |
153 |
tgataaattaaagattgagatgcttaccaaatcagccctcctctcctccaatgttatatc |
212 |
Q |
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| T |
29263949 |
tgataaattaaa-actgagatgcttaccaaatcagccctcctttcctccaatgttatatc |
29263891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 18029582 - 18029623
Alignment:
| Q |
2 |
attacagtgagttaattcattttctcaaattattaatggtgt |
43 |
Q |
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| T |
18029582 |
attacagtgagttaagtcattttctcaaattattattggtgt |
18029623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 9791381 - 9791348
Alignment:
| Q |
18 |
tcattttctcaaattattaatggtgttgaagtgt |
51 |
Q |
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| T |
9791381 |
tcattttctcaaattattaatggtgttaaagtgt |
9791348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 32145262 - 32145226
Alignment:
| Q |
19 |
cattttctcaaattattaatggtgttgaagtgtcaat |
55 |
Q |
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| T |
32145262 |
cattttctcaaattattactggtgttaaagtgtcaat |
32145226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 30177036 - 30177072
Alignment:
| Q |
17 |
ttcattttctcaaattattaatggtgttgaagtgtca |
53 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |
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| T |
30177036 |
ttcattttctcaaattattactggtgttgacgtgtca |
30177072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 34625765 - 34625717
Alignment:
| Q |
13 |
ttaattcattttctcaaattattaatggtgttgaagtgtcaatttcatg |
61 |
Q |
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|||||||||||||||||||||||| ||||| || || ||||||||||| |
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| T |
34625765 |
ttaattcattttctcaaattattatcggtgtcgatgtatcaatttcatg |
34625717 |
T |
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