View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_84 (Length: 272)
Name: NF3223_high_84
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_84 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 36714691 - 36714935
Alignment:
| Q |
17 |
gtatcaatgtctttttctgaaatcatggtgacgtggtgattttgttttgtttaaactttagaatgtacgttgttttgttagattttacaaactcataatg |
116 |
Q |
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| T |
36714691 |
gtatcaatgtctttttctgaaatcatggtgacgtggtgattttgttttgttcaaactttagaatgtacgttgttttgttagattttacaaactcataatg |
36714790 |
T |
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| Q |
117 |
gttcatcttgattctgtcaaatcggacacgtgactatgtcaaatcaaacaaatttgttttaaaataattaactaaagacttaatataatgatgaaacttt |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36714791 |
gttcatcgtgattctgtcaaatcggacacgtgactatgtcaaatcaaacaaatttgttttaaaataattaactaaagacttaatataatgatgaaacttt |
36714890 |
T |
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| Q |
217 |
caaaagaattaaataaagattttcattactgttcttttgagtatt |
261 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36714891 |
taaaagaattaaataaagactttcattactgttcttttgagtatt |
36714935 |
T |
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