View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_86 (Length: 271)
Name: NF3223_high_86
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_86 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 24316759 - 24316504
Alignment:
| Q |
2 |
ccaataaaatcatcttgagagctaaaacagtaagtttcgatccacccccaaaccgcaaaaatgacgcatatacgataagaggttcggtgaagaggccata |
101 |
Q |
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| T |
24316759 |
ccaattaaatcatcttgagagctaaaacagtaaatttcaatccacccccaaactgcagaaatgacgcatatgcgacaagaggttcggtgaagaggccgta |
24316660 |
T |
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| Q |
102 |
gaaaaatcaagccagtcacaaattagaacccaaatattaccataaaatgaacacaagacaaacagatgatctctatcttcggttctcccacactcactta |
201 |
Q |
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| T |
24316659 |
gaaaaaccaagccagacacaaattagaacccaaatattaccataaaatgcacacaagacaaacagatgatctctatcttcagtgctcccacaccctctta |
24316560 |
T |
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| Q |
202 |
tacaaagttcaattaagcagacttaaggcatgtttggtatcatagtaggttgttgg |
257 |
Q |
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| T |
24316559 |
tacaaagttgaattaagcagacttaagacatgtttggtatcatagtaggttgttgg |
24316504 |
T |
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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 40707812 - 40707995
Alignment:
| Q |
8 |
aaatcatcttgagagctaaaacagtaagtttcgatccacccccaaaccgcaaaaatgacgcatatacgataagaggttcggtgaagaggccatagaaaaa |
107 |
Q |
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| T |
40707812 |
aaatcattttgaaagctaaaacagtaaattttgatccacccccaagccgcagaaatgacgcagatacgacaagaggatcggtgaagaggcggcaggaata |
40707911 |
T |
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| Q |
108 |
tcaagccagtcacaaattagaacccaaatattaccataaaatgaacacaagacaaacagatgatctctatcttcggttctccca |
191 |
Q |
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| T |
40707912 |
ccaagccagccactaattaggacccaaatgttaccataaaaatcacacgcgacaaacagatggtctatatcttcggtgctccca |
40707995 |
T |
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