View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_88 (Length: 263)
Name: NF3223_high_88
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_88 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 8315389 - 8315152
Alignment:
| Q |
12 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaag |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8315389 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaacaaaatcaatcaaaag |
8315290 |
T |
|
| Q |
112 |
cctaagaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagcacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8315289 |
cctaagaataataaaatcaacctaaaaccactcacatgattaatcaaacccaaaaaaaccataaacaaattctacacaacaaaatcattcaaaagcacac |
8315190 |
T |
|
| Q |
212 |
taagaataaataatcaacctgaaagcaatagcaatatc |
249 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
8315189 |
taagaataaataatcaacctgaaagcaatagcaatatc |
8315152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 2236349 - 2236576
Alignment:
| Q |
12 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
110 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| | |||||| || |||||||||||||||| |||||||||||||| |
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| T |
2236349 |
aaattatactattctctatacatcaatctacaatctcttaatcgattatgtattttactcagacccaaaagcaattctatacaacaaaatcaatcaaaaa |
2236448 |
T |
|
| Q |
111 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
207 |
Q |
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||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
2236449 |
gcctactaagaataatcaaatcaacctgaaaccactcgcatgatcaagcaaacccaacaaaaccataaacaaattttacacaacaaaatcattcagaagc |
2236548 |
T |
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| Q |
208 |
acactaagaat-aaataatcaacctgaa |
234 |
Q |
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||||| ||||| |||||||||||||||| |
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| T |
2236549 |
acacttagaataaaataatcaacctgaa |
2236576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 2236575 - 2236631
Alignment:
| Q |
194 |
aatcattcaaaagcacactaagaataaa-taatcaacctgaaagcaatagcaatatc |
249 |
Q |
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||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
2236575 |
aatcattcagaagcacacttagaataaaataatcaacctgaaagcaatagcaatatc |
2236631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 34806310 - 34806537
Alignment:
| Q |
12 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||| | ||||| | |||||| || ||||||||||||||| |||||||||||||| |
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| T |
34806310 |
aaattatactattctctatacatcaatctacaatctcttaattgattatgtattttactcagacccaaaagcaattctatacaccaaaatcaatcaaaaa |
34806409 |
T |
|
| Q |
111 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
207 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
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| T |
34806410 |
gcctactaagaataatcaaatcaacctgaaaccactcgcatgatcaagcaaacccaacaaaacgataaacaaattctacacaacaaaatcattcagaagc |
34806509 |
T |
|
| Q |
208 |
acactaagaat-aaataatcaacctgaa |
234 |
Q |
| |
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||||| ||||| |||||||||||||||| |
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|
| T |
34806510 |
acacttagaataaaataatcaacctgaa |
34806537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 34806536 - 34806592
Alignment:
| Q |
194 |
aatcattcaaaagcacactaagaataaa-taatcaacctgaaagcaatagcaatatc |
249 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
34806536 |
aatcattcagaagcacacttagaataaaataatcaacctgaaagcaatagcaatatc |
34806592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 7847 - 8060
Alignment:
| Q |
12 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
110 |
Q |
| |
|
||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||| |
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|
| T |
7847 |
aaattatactattctatgtacataaatctacaatctcttaatcgattttgtatttcattcagacacaaaagcaattttatacgacaaaatcaatcaaaaa |
7946 |
T |
|
| Q |
111 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
207 |
Q |
| |
|
||||| | |||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
7947 |
gcctattaaaaataatcaaatcaacctgaaa--------atgatcaagcaaacccaacaaaaccatgaacaaattctacataacaaaatcattcaaaagc |
8038 |
T |
|
| Q |
208 |
acactaagaataaataatcaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
8039 |
acactaagaataaataatcaac |
8060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 9325330 - 9325543
Alignment:
| Q |
12 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
110 |
Q |
| |
|
||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||| |
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|
| T |
9325330 |
aaattatactattctatgtacataaatctacaatctcttaatcgattttgtatttcattcagacacaaaagcaattttatacgacaaaatcaatcaaaaa |
9325429 |
T |
|
| Q |
111 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
207 |
Q |
| |
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||||| | |||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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|
| T |
9325430 |
gcctattaaaaataatcaaatcaacctgaaa--------atgatcaagcaaacccaacaaaaccatgaacaaattctacataacaaaatcattcaaaagc |
9325521 |
T |
|
| Q |
208 |
acactaagaataaataatcaac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9325522 |
acactaagaataaataatcaac |
9325543 |
T |
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Back To:
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