View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_high_93 (Length: 261)
Name: NF3223_high_93
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_93 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25033111 - 25032867
Alignment:
| Q |
1 |
aatgatccctagttgaaagatatttctttgaggatttgtttccctaggttggtttaggtttctatccaaaaagaagctaaagtaatatatatgattctaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25033111 |
aatgatccctagttgaacgatatttctttgaggatttgtttccctaggttggtttaggtttctatccaaaaagaagctaaagtaatatatatgattctaa |
25033012 |
T |
|
| Q |
101 |
gggagggatttgagtgggtgagggatctttgtgattttgagagagtttcttcatagagtcttatcttctctaaaggtgtatatttgtgggtatggaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25033011 |
gggagggatttgagtgggtgagggatctttgtgattttgagagagttgcttcacaaagtcttatcttctctaaaggtgtatatttgtgggtatggaagaa |
25032912 |
T |
|
| Q |
201 |
tgattcatctagcatttatttgatgaggtcagcttataggttcat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25032911 |
tgattcatctagcatttatttgatgaggtcagcttataggttcat |
25032867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 30869301 - 30869366
Alignment:
| Q |
18 |
agatatttctttgaggatttgtttccctaggttggtttaggtttctatccaaaaagaagctaaagt |
83 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| || | || ||||| || |||||||||||||| |
|
|
| T |
30869301 |
agatattcctttgagaatttgtttccctaggttgtttcaagtgtctattcagaaagaagctaaagt |
30869366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 8025647 - 8025603
Alignment:
| Q |
21 |
tatttctttgaggatttgtttccctaggttggtttaggtttctat |
65 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8025647 |
tattcctttgaggattcgtttccctaggttgttttaggtttctat |
8025603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 27886121 - 27886024
Alignment:
| Q |
32 |
ggatttgtttccctaggttggtttaggtttctatccaaaaagaagctaaagtaatatatatgattctaagggagggatttgagtgggtgagggatctt |
129 |
Q |
| |
|
||||||| |||| ||||||| || |||||||||| || ||||||||||||| || ||||||| | | || ||||||||| ||||||| | |||||| |
|
|
| T |
27886121 |
ggatttgcttccttaggttgtttcaggtttctattcataaagaagctaaagatatttatatgactatgagatagggatttgggtgggtgtgtgatctt |
27886024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University