View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_96 (Length: 260)
Name: NF3223_high_96
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 19100275 - 19100509
Alignment:
| Q |
11 |
cagagacgacattacgtaaactttggaagtgtgttgatggtttttgtgatgtaacggttaaagaaatcactaaatcgtgtttcatatgtccaaaagatgt |
110 |
Q |
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| T |
19100275 |
cagagacgacattacgtaaactttggaagtgtgttgatggtttttgtgatgtaacggttaaagaaatcactaaatcgtgtttcatatgtccaaaagatgt |
19100374 |
T |
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| Q |
111 |
tatttcaatgataagagattgatactttaacttcaaagaacatggttcaaataccacatgacgagttttatttttactctaacccacagagttgtaaaat |
210 |
Q |
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| T |
19100375 |
catttcaatgataagagattgatactttaacttcaaagaacatggttcaaataccaactgaggagttttatttttactctaacccacagagttgtaaaat |
19100474 |
T |
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| Q |
211 |
gggcattaattccaccattattaataataatttct |
245 |
Q |
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| T |
19100475 |
gggcattaattccaccattattaataataatttct |
19100509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 21205840 - 21205881
Alignment:
| Q |
202 |
ttgtaaaatgggcattaattccaccattattaataataattt |
243 |
Q |
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| T |
21205840 |
ttgtaaaatggtcattaataccaccataattaataataattt |
21205881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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