View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_98 (Length: 257)
Name: NF3223_high_98
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_98 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 53492989 - 53493126
Alignment:
| Q |
95 |
atgtatgaagaaagcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctatagctagctaat |
194 |
Q |
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| T |
53492989 |
atgtatgaagaa-gcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctatagctagctaat |
53493087 |
T |
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| Q |
195 |
caagagtataaaataattacaatatacataaatgcattc |
233 |
Q |
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| T |
53493088 |
caagagtataaaataagtacaatatacataaatgcattc |
53493126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 16072156 - 16072283
Alignment:
| Q |
106 |
aagcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctatagctagctaatcaagagtataa |
205 |
Q |
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| T |
16072156 |
aagcgtagttttaccaaaaactaaaacatcaccatttggaaagaatcataaattttatttattctgcatcaactccatagctagctaatcaagagtataa |
16072255 |
T |
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| Q |
206 |
aataattacaatatacataaatgcattc |
233 |
Q |
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| T |
16072256 |
aataagtacaatatatataaatgcattc |
16072283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 53492861 - 53492941
Alignment:
| Q |
1 |
cagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc |
81 |
Q |
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| T |
53492861 |
cagttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgagatatgaaagcaactctcagc |
53492941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 53500812 - 53500892
Alignment:
| Q |
1 |
cagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc |
81 |
Q |
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| T |
53500812 |
cagttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgaaatatgaaagcaactctcagc |
53500892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 16072019 - 16072095
Alignment:
| Q |
5 |
tctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc |
81 |
Q |
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| T |
16072019 |
tctcaacattcattttctttatctctggattaaaaaaagcctgcacatttgtttgagatatgaaagcaactctcagc |
16072095 |
T |
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