View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_10 (Length: 546)

Name: NF3223_low_10
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_10
NF3223_low_10
[»] chr7 (3 HSPs)
chr7 (203-503)||(48343228-48343541)
chr7 (14-125)||(48344776-48344887)
chr7 (133-197)||(48344679-48344743)
[»] chr2 (2 HSPs)
chr2 (23-197)||(27176198-27176367)
chr2 (26-102)||(35209172-35209248)
[»] chr8 (2 HSPs)
chr8 (31-189)||(14221248-14221407)
chr8 (40-90)||(28735815-28735865)
[»] scaffold0201 (1 HSPs)
scaffold0201 (55-163)||(18063-18172)
[»] chr5 (1 HSPs)
chr5 (41-121)||(27454002-27454082)
[»] chr4 (1 HSPs)
chr4 (22-102)||(29510281-29510360)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 203 - 503
Target Start/End: Complemental strand, 48343541 - 48343228
Alignment:
Q  203 taaatagtatgaattttggatttatataaaactttgtgtgcctgatcgttaacgattagtgaaatttatattttaacatgagttatcaagataactcatc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48343541 taaatagtatgaattttggatttatataaaactttgtgtgcctgatcgttaacgattagtgaaatttatattttaacatgagctatcaagataactcatc 48343442  T
Q  303 ttagagtaacctctggagtcaacatattcacattctattgtgtgtgtattcatttcataatatactaattaaacgtgttaatccaaagtattgctagcaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48343441 ttagagtaacctctggagtcaacatattcacattctattgtgtgtgtattcatttcataatatactaattaaacgtgttaatccaaagtattgctagcaa 48343342  T
Q  403 accttgtctcgtattttggta-------------annnnnnnnattttggtattatttattacacagtgaatgtaataaaacttgcaagacaaccctact 489  Q
    |||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48343341 accttgtctcgtattttggtatttttttttttttggtacaaatattttggtattatttattacacagtgaatgtaataaaacttgcaagacaaccctact 48343242  T
Q  490 atagttactccttc 503  Q
    ||||||||||||||    
T  48343241 atagttactccttc 48343228  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 48344887 - 48344776
Alignment:
Q  14 atatccacgttaaaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  48344887 atatccacgttaaaagccttacaactcttaaaactcattccaccaaacaccttaggagtggaaagtctttcccaagacatccagtgcaagtctcgggaat 48344788  T
Q  114 ttgctgaaatat 125  Q
    ||||||||||||    
T  48344787 ttgctgaaatat 48344776  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 48344743 - 48344679
Alignment:
Q  133 ccaaaagaattttacattttctcaatttcatgagcgagtgaacccggaaggagaaaaacactcat 197  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  48344743 ccaaaggaattttacattttctcaatttcatgagtgagtgaacccggaaggagaaaaagactcat 48344679  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 197
Target Start/End: Complemental strand, 27176367 - 27176198
Alignment:
Q  23 ttaaaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaa 122  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||   |||||||||||||||     
T  27176367 ttaaaagccttaaaactcttaaaacacattccaccaaacaccttaggagtggaaagtctttcctaagatatctagtgcaag---cgagaatttgctgaat 27176271  T
Q  123 tataaaccccccaaaagaattttacattttctcaatttcatgagcgagtgaacccggaaggagaaaaacactcat 197  Q
    ||| | ||| ||  |  ||||| ||||||||| || ||||| || |||||||||| ||| |||||||||||||||    
T  27176270 tatgaccccacc--agtaatttgacattttcttaaattcattagtgagtgaacccagaatgagaaaaacactcat 27176198  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 35209172 - 35209248
Alignment:
Q  26 aaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaa 102  Q
    |||||||||  ||| ||||||| ||| |||||||| ||||||| ||| ||||||||||| || |||| || ||||||    
T  35209172 aaagccttaagacttttaaaacccataccaccaaaaaccttaggagtagaaagtctttctcatgacaaccggtgcaa 35209248  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 14221248 - 14221407
Alignment:
Q  31 cttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaatataaacc 130  Q
    |||| |||||||||||| |||||||||||||| ||||| | |||||| ||||||| | |||| | | |||||| ||||||| || |||||| ||| |  |    
T  14221248 cttaaaactcttaaaacccattccaccaaacatcttaggattggaaattctttcctaggacagctactgcaagcctcgagagttagctgaattattaggc 14221347  T
Q  131 ccccaaaa-gaattttacattttctcaatttcatgagcgagtgaacccggaaggagaaaa 189  Q
    | |||||| || ||| ||||| |||||||||||| |  || ||| | |||||||||||||    
T  14221348 caccaaaaggagtttaacattctctcaatttcattaatgactgatctcggaaggagaaaa 14221407  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 28735865 - 28735815
Alignment:
Q  40 cttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaaga 90  Q
    |||||||| |||||||||||||||||||| | ||||||| | |||||||||    
T  28735865 cttaaaacccattccaccaaacaccttaggaatggaaagacgttcccaaga 28735815  T

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Target: scaffold0201 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 18172 - 18063
Alignment:
Q  55 accaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaaatataaaccc-cccaaaagaattttacattttc 153  Q
    |||||||||||||| |  ||| |||||||||||||||| |||||| ||  ||| ||| ||||||||| |||   ||| || |||||| ||| ||||||||    
T  18172 accaaacaccttaggaacggatagtctttcccaagacagccagtgtaatcctcaagagtttgctgaattatgtccccaccaaaaagagtttaacattttc 18073  T
Q  154 tcaatttcat 163  Q
    || |||||||    
T  18072 tctatttcat 18063  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 27454002 - 27454082
Alignment:
Q  41 ttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaagtctcgagaatttgctgaa 121  Q
    ||||||| ||| || ||||||||||||| |   ||||| | ||||||||| | |||||||||  |||||||||||||||||    
T  27454002 ttaaaacccatacctccaaacaccttaggaactgaaaggcgttcccaagatagccagtgcaatcctcgagaatttgctgaa 27454082  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 29510360 - 29510281
Alignment:
Q  22 gttaaaagccttacaactcttaaaactcattccaccaaacaccttagaagtggaaagtctttcccaagacatccagtgcaa 102  Q
    |||||||||||||  ||| ||||||| ||| || ||||| ||||| | ||||||||||| ||||||||||| |||| ||||    
T  29510360 gttaaaagccttaagacttttaaaacccataccgccaaaaaccttgggagtggaaagtc-ttcccaagacaaccagagcaa 29510281  T

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