View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_103 (Length: 252)

Name: NF3223_low_103
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_103
NF3223_low_103
[»] chr3 (11 HSPs)
chr3 (1-204)||(30551943-30552146)
chr3 (172-233)||(959336-959397)
chr3 (172-233)||(39580382-39580443)
chr3 (174-233)||(39674648-39674707)
chr3 (172-233)||(25041826-25041887)
chr3 (172-233)||(42864754-42864815)
chr3 (172-230)||(41530224-41530282)
chr3 (172-231)||(29360229-29360288)
chr3 (185-233)||(21869343-21869391)
chr3 (189-233)||(27391143-27391187)
chr3 (172-232)||(51360646-51360706)
[»] chr7 (9 HSPs)
chr7 (172-233)||(22204851-22204912)
chr7 (172-233)||(22229827-22229888)
chr7 (172-233)||(26279473-26279534)
chr7 (172-234)||(45281303-45281365)
chr7 (172-233)||(25444096-25444157)
chr7 (172-233)||(30948048-30948109)
chr7 (172-233)||(19927783-19927843)
chr7 (172-233)||(40819459-40819519)
chr7 (174-233)||(15042789-15042848)
[»] chr5 (5 HSPs)
chr5 (172-233)||(6666185-6666246)
chr5 (172-233)||(13854221-13854282)
chr5 (172-233)||(36606630-36606691)
chr5 (172-233)||(8871733-8871794)
chr5 (172-233)||(32659410-32659471)
[»] chr2 (3 HSPs)
chr2 (172-233)||(14313913-14313974)
chr2 (172-233)||(14811765-14811826)
chr2 (174-234)||(13043354-13043410)
[»] scaffold0017 (1 HSPs)
scaffold0017 (172-233)||(37577-37638)
[»] chr8 (10 HSPs)
chr8 (172-233)||(10861335-10861396)
chr8 (172-233)||(17068664-17068725)
chr8 (172-233)||(17579548-17579609)
chr8 (172-233)||(17630688-17630749)
chr8 (172-233)||(20289828-20289889)
chr8 (172-233)||(21076458-21076519)
chr8 (172-233)||(29055054-29055115)
chr8 (172-233)||(34964274-34964335)
chr8 (128-233)||(44718101-44718206)
chr8 (172-233)||(3046297-3046358)
[»] chr6 (5 HSPs)
chr6 (172-233)||(8862520-8862581)
chr6 (172-233)||(21112585-21112646)
chr6 (128-233)||(1413928-1414032)
chr6 (172-229)||(9149737-9149794)
chr6 (176-233)||(34752388-34752445)
[»] chr4 (4 HSPs)
chr4 (172-233)||(54260604-54260665)
chr4 (174-234)||(32761020-32761080)
chr4 (172-231)||(26261669-26261728)
chr4 (44-102)||(26261347-26261405)
[»] chr1 (3 HSPs)
chr1 (172-233)||(3365949-3366010)
chr1 (174-233)||(22150211-22150270)
chr1 (175-234)||(23205712-23205771)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30551943 - 30552146
Alignment:
Q  1 atattccctcttcaaatcattactaccgattaactcattcttagcatcaccggttgcctccatcaacacctcggatgtgttctactctgtttctcttctc 100  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30551943 atattccctcttctaatcattactaccgataaactcaatcttaacatcaccggttgcctccatcaacacctcggatgtgttctactctgtttctcttctc 30552042  T
Q  101 tccattgatgttcttttatgatagtactactattgatgtttaactatattctaatttgtgcaggnnnnnnntgtaattgtcacttgttttgatcattttt 200  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||| ||||||||||||||||||    
T  30552043 tccaatggtgttcttttatgatagtactactattgatgtttaactatattctaacttgtgcaggaaaaaaatgtaattgtcgcttgttttgatcattttt 30552142  T
Q  201 atta 204  Q
    ||||    
T  30552143 atta 30552146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 959336 - 959397
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  959336 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 959397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 39580382 - 39580443
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  39580382 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 39580443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 39674648 - 39674707
Alignment:
Q  174 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  39674648 taattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 39674707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 25041826 - 25041887
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| | ||||||||||    
T  25041826 tgtaattgtcacttgttttgatcattttcattaaggtgaatgtttgtttctcatcattttta 25041887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 42864754 - 42864815
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||    
T  42864754 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcttcattttta 42864815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 41530282 - 41530224
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattt 230  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||| || |||||||||    
T  41530282 tgtaattgtcacttgctttgatcattttcattaatgtgaatgtttgattattatcattt 41530224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 29360229 - 29360288
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttt 231  Q
    |||||||||||||  ||||||||||||| |||||| | ||||||||||| ||||||||||    
T  29360229 tgtaattgtcactaattttgatcattttcattaatgtcaatgtttgtttattatcatttt 29360288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 21869343 - 21869391
Alignment:
Q  185 tgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    ||||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  21869343 tgttttgatcattttcattaatgtaaatgtttgtttattatcattttta 21869391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 27391187 - 27391143
Alignment:
Q  189 ttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  27391187 ttgatcattttcattaatgtgaatgtttgtttattatcattttta 27391143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 51360706 - 51360646
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttt 232  Q
    |||||||||||||||  || |||||||| ||||   ||||||||||||| |||||||||||    
T  51360706 tgtaattgtcacttgactttatcattttcattagcgtgaatgtttgtttattatcattttt 51360646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 22204912 - 22204851
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  22204912 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcattttta 22204851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 22229827 - 22229888
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  22229827 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcattttta 22229888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 26279534 - 26279473
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  26279534 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcattttta 26279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 45281303 - 45281365
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttaa 234  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||    
T  45281303 tgtaattgtcacttgttttgatcattttcattaatgtgaatgttagtttattatcatttttaa 45281365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 25444096 - 25444157
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  25444096 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 25444157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 30948048 - 30948109
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  30948048 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 30948109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 19927843 - 19927783
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||| | ||||||||||    
T  19927843 tgtaattgtcacttgttttgatca-tttcattaatgtgaatgtttgtttatcatcattttta 19927783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 40819519 - 40819459
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||| | ||||||||||    
T  40819519 tgtaattgtcacttgttttgatca-tttcattaatgtgaatgtttgtttatcatcattttta 40819459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 15042848 - 15042789
Alignment:
Q  174 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    ||||| |||||||||||||||||||| ||| |  | ||||||||||| ||||||||||||    
T  15042848 taattatcacttgttttgatcattttcatttacgtaaatgtttgtttattatcattttta 15042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 6666185 - 6666246
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  6666185 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcattttta 6666246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 13854282 - 13854221
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  13854282 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 13854221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 36606630 - 36606691
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  36606630 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 36606691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 8871733 - 8871794
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  8871733 tgtatttgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 8871794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 32659410 - 32659471
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||| ||||||| |||||||||||| |||| ||||||||  |||||||||||    
T  32659410 tgtaattgtcacttcttttgattatttttattaatgtgaaagtttgtttaatatcattttta 32659471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 14313974 - 14313913
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  14313974 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcattttta 14313913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 14811765 - 14811826
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  14811765 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 14811826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 13043410 - 13043354
Alignment:
Q  174 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttaa 234  Q
    |||||||||||||||||||||||||| ||||||     ||||||||| |||||||||||||    
T  13043410 taattgtcacttgttttgatcattttcattaat----gtgtttgtttattatcatttttaa 13043354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 37638 - 37577
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  37638 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 37577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 10861396 - 10861335
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  10861396 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 10861335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 17068664 - 17068725
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  17068664 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 17068725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 17579609 - 17579548
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  17579609 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 17579548  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 17630749 - 17630688
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  17630749 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 17630688  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 20289828 - 20289889
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  20289828 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 20289889  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 21076458 - 21076519
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  21076458 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 21076519  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 29055054 - 29055115
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  29055054 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 29055115  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 34964335 - 34964274
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  34964335 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 34964274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 44718206 - 44718101
Alignment:
Q  128 tactattgatgtttaactatattctaatttgtgcaggnnnnnnntgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatca 227  Q
    ||||| |||| |||| ||||||| ||||||||||||        ||||||||||||||||| |||||||||||||| || | ||||||||||| ||||||    
T  44718206 tactaatgatatttagctatattttaatttgtgcagaaaaaatatgtaattgtcacttgttctgatcatttttatttatgtaaatgtttgtttattatca 44718107  T
Q  228 ttttta 233  Q
    ||||||    
T  44718106 ttttta 44718101  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 3046358 - 3046297
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    ||||||| |||||||||||||||||||| |||||| |||| |||| ||| ||||||||||||    
T  3046358 tgtaattatcacttgttttgatcattttcattaatgtgaacgtttttttattatcattttta 3046297  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 8862520 - 8862581
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  8862520 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 8862581  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 21112585 - 21112646
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  21112585 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 21112646  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 1414032 - 1413928
Alignment:
Q  128 tactattgatgtttaactatattctaatttgtgcaggnnnnnnntgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatca 227  Q
    ||||| ||||||||| |||||||||||||||||  ||       ||||| |||||||||||||||||||||| |||| | ||||||||||||| ||||||    
T  1414032 tactaatgatgtttagctatattctaatttgtgt-ggaaaaatatgtaaatgtcacttgttttgatcattttcattagtgtgaatgtttgtttattatca 1413934  T
Q  228 ttttta 233  Q
    ||||||    
T  1413933 ttttta 1413928  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 9149794 - 9149737
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatt 229  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||    
T  9149794 tgtaattgtcacttgttttgatcattttcattaacctgaatgtttgtttattatcatt 9149737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 34752388 - 34752445
Alignment:
Q  176 attgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||| ||| |||||||||||||||||||| | ||||||| ||| ||||||||||||    
T  34752388 attgtctcttcttttgatcatttttattaatgttaatgtttatttattatcattttta 34752445  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 54260604 - 54260665
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  54260604 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcattttta 54260665  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 32761020 - 32761080
Alignment:
Q  174 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttaa 234  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  32761020 taattgtcgcttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttaa 32761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 26261669 - 26261728
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttt 231  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||||    
T  26261669 tgtaattgtcacttgttttgatcattttcatttatgtgaatgtttgtttattatcatttt 26261728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 26261347 - 26261405
Alignment:
Q  44 gcatcaccggttgcctccatcaacacctcggatgtgttctactctgtttctcttctctc 102  Q
    ||||||| | ||||||||||||||||||| | |||||||| |||| |||||||||||||    
T  26261347 gcatcactgattgcctccatcaacacctccggtgtgttctgctctctttctcttctctc 26261405  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 3365949 - 3366010
Alignment:
Q  172 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||    
T  3365949 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttatttattatcattttta 3366010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 22150270 - 22150211
Alignment:
Q  174 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 233  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  22150270 taattgtcacttgttttggtcattttcattaatgtgaatgtttgtttattatcattttta 22150211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 23205771 - 23205712
Alignment:
Q  175 aattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttaa 234  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||    
T  23205771 aattgtcacttgttttgatcattttcattaatgtgaatgttagtttattatcatttttaa 23205712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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