View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_106 (Length: 251)

Name: NF3223_low_106
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_106
NF3223_low_106
[»] chr1 (1 HSPs)
chr1 (1-240)||(35140419-35140658)
[»] chr3 (24 HSPs)
chr3 (33-240)||(6258971-6259178)
chr3 (1-237)||(13270609-13270839)
chr3 (1-240)||(6245036-6245266)
chr3 (1-240)||(6168634-6168870)
chr3 (42-239)||(6142070-6142264)
chr3 (8-171)||(6591469-6591632)
chr3 (8-166)||(7749752-7749910)
chr3 (1-166)||(6916844-6917009)
chr3 (1-159)||(6899831-6899989)
chr3 (36-239)||(6265469-6265669)
chr3 (41-239)||(6882287-6882482)
chr3 (6-165)||(8569095-8569254)
chr3 (41-165)||(6520312-6520436)
chr3 (1-165)||(7587590-7587754)
chr3 (41-239)||(6722145-6722340)
chr3 (39-165)||(8471317-8471443)
chr3 (42-169)||(8589485-8589612)
chr3 (41-142)||(6947024-6947125)
chr3 (39-165)||(6839054-6839180)
chr3 (30-240)||(6554516-6554723)
chr3 (41-166)||(8454409-8454534)
chr3 (39-240)||(5267812-5268010)
chr3 (41-100)||(6480197-6480256)
chr3 (30-240)||(6735734-6735941)
[»] chr7 (1 HSPs)
chr7 (39-145)||(6573465-6573571)
[»] scaffold0425 (1 HSPs)
scaffold0425 (30-166)||(7626-7762)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35140658 - 35140419
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140658 ccaactcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 35140559  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140558 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggt 35140459  T
Q  201 aaacgccgcaaatcagtctccaatatcttaacccattcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35140458 aaacgccgcaaatcagtctccaatatcttaacccattcat 35140419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 6258971 - 6259178
Alignment:
Q  33 ccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttca 132  Q
    |||||||||||||||| || ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  6258971 ccctttagcaaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttca 6259070  T
Q  133 gattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatcttaac 232  Q
    ||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  6259071 gattggaagggaggctaaggtaactcattctcaaagcggaataaatgttgctgttgtcacccttgggtaaacgccacaaatcagtctccaatatcttaac 6259170  T
Q  233 ccattcat 240  Q
    ||||||||    
T  6259171 ccattcat 6259178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13270839 - 13270609
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| |||||||||||||||||||||      |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||    
T  13270839 ccaactcttcttcatttttggctatt------ccctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttggg 13270746  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || || || |||||||||| | ||      
T  13270745 aaatatagaacaatatgcaaaacaatgcttcagattggaaggtaggctaaggtaactcattctcagaatggaaaaaatgctgttgctgtcaccttcggag 13270646  T
Q  201 aaacgccgcaaatcagtctccaatatcttaacccatt 237  Q
    ||| ||| |||||||||||||||||||||||||||||    
T  13270645 aaatgccacaaatcagtctccaatatcttaacccatt 13270609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6245036 - 6245266
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| |||||||||| ||||||||||      ||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6245036 ccaactcttcttcatctttggctatt------ccctttatcaaaccttctgccatccaaagtttgattaatccatccttttcaaactcataacccttggg 6245129  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggt 200  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||   ||||||||| ||  |||    
T  6245130 aaatatagaacaataagcaaaacaatgcttcagattggaagggaggttaaggtaactcattcttagaacggaataaatgt---tgctgtcactctcaggt 6245226  T
Q  201 aaacgccgcaaatcagtctccaatatcttaacccattcat 240  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  6245227 aaacgccacaaatcagtctctaatatcttaacccattcat 6245266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6168634 - 6168870
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| ||||||||||||||| || || | |||| |||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  6168634 ccaactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaacttataacccttggg 6168733  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggt 200  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||  ||| |||| |||||||    |||| ||||||| ||| |||    
T  6168734 aaatatagaacaatatgcaaaacaatgcttcagatttgaagggaggttaaggtaactctgtcttagaaaggaataa---atgcttctgtcactcttaggt 6168830  T
Q  201 aaacgccgcaaatcagtctccaatatcttaacccattcat 240  Q
    |||| || |||||||||||| |||||||||||||||||||    
T  6168831 aaactccacaaatcagtctctaatatcttaacccattcat 6168870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 6142070 - 6142264
Alignment:
Q  42 aaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaag 141  Q
    |||||||||| ||||||||||||||||||| || | || ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||  ||||    
T  6142070 aaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaatgcttcagatcagaag 6142169  T
Q  142 ggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatcttaacccattca 239  Q
    |||||||||||||||| |||||||||||||||| | |||   | | ||||||||  |||||||||| ||||||||||||||||||| |||||||||||    
T  6142170 ggaggctaaggtaactgattctcagaacggaattaatgt---ttccgtcaccctctggtaaacgccacaaatcagtctccaatatcctaacccattca 6142264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 6591632 - 6591469
Alignment:
Q  8 ttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatata 107  Q
    ||||||| |||||  | ||||||||| ||||||||| ||||||| ||||||||||||||||||| || | || ||||||||||| |||||||||||||||    
T  6591632 ttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatata 6591533  T
Q  108 gaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacgg 171  Q
    ||| |||| ||||||||| ||||||||||||| |||||| |||||||||||| |||||| ||||    
T  6591532 gaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctcagtacgg 6591469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 7749752 - 7749910
Alignment:
Q  8 ttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatata 107  Q
    ||||||| ||||| || || |||||| ||||||||| ||||||| |||||||||||||||||| |||   || ||||||||||| ||||| |||||||||    
T  7749752 ttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaactcatagccctttggaaatata 7749851  T
Q  108 gaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcag 166  Q
    ||| |||| ||||||||| |||||||||||||||||||| |||||||| ||| ||||||    
T  7749852 gaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctcag 7749910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 6916844 - 6917009
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| ||||||||| ||||| || || | |||| ||| ||||||||||||| ||||||||||||||||||| || | || ||||||||||| ||||||||    
T  6916844 ccaactcttcttcacttttgtctcttccacaacacttcagcaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttggg 6916943  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcag 166  Q
    |||||| ||| | || |||||||||||||||||||| |||| |||  |||||||||||||||||||    
T  6916944 aaatatggaacagtaagcaaaacaatgcttcagatttgaagagagattaaggtaactcattctcag 6917009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 6899831 - 6899989
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| ||||||||| ||||| || || | |||| ||| ||||||||||||| ||||||||||||||||| | || | || ||||||||||| ||||| ||    
T  6899831 ccaactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacccttctcaaactcatagccctttgg 6899930  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactca 159  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  6899931 aaataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactca 6899989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 6265469 - 6265669
Alignment:
Q  36 tttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagat 135  Q
    |||| ||||||||||| |||||||||| |||||||| || | |  ||||||||||||||||||||||   ||||  || | ||||||||| |||||||||    
T  6265469 tttaacaaaccttctgccatccaaagcctgattaattcaccctcctcaaactcataacccttgggaagattagaccaacaagcaaaacaacgcttcagat 6265568  T
Q  136 tggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatcttaaccca 235  Q
    ||| ||||||||||||||||  ||| ||||||   | | ||||  ||| | ||||||||| |||||||| || |||||||||||||||||||| ||||||    
T  6265569 tgggagggaggctaaggtaatgcatcctcaga---gcaaaattaatgcagttgtcaccctcgggtaaacaccacaaatcagtctccaatatctcaaccca 6265665  T
Q  236 ttca 239  Q
    ||||    
T  6265666 ttca 6265669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 6882287 - 6882482
Alignment:
Q  41 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa 140  Q
    ||||||||||| ||||||||| || |||| | || | || |||| |||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  6882287 caaaccttctgccatccaaagtttaattagttcacccttctcaagctcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagattggaa 6882386  T
Q  141 gggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatcttaacccattca 239  Q
    |||||| |||||||||||| |||||| |   |  | ||  ||  | | ||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  6882387 gggaggataaggtaactcaatctcagta---acaagttaatgtagatttcaccctcgggtaaacgccacaaatcagtctccaataccttaatccattca 6882482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 8569254 - 8569095
Alignment:
Q  6 tcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaata 105  Q
    ||||||||| ||||| || |||  |||| ||| | ||||||||||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||||| |    
T  8569254 tcttcttcacttttgtctcttttgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaaaa 8569155  T
Q  106 tagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctca 165  Q
    | ||| |||| ||||||||| |||| ||||||||||||||  || ||||||||| |||||    
T  8569154 ttgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaatctca 8569095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 6520436 - 6520312
Alignment:
Q  41 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa 140  Q
    ||||||||||| ||||||||||||||| |||  ||| |||| ||| | ||||||||||||||| |||||| |||||||||||||| |||| |||||||||    
T  6520436 caaaccttctgccatccaaagcttgatcaatttatcttttttaaatttataacccttgggaaaaatagaacaatatgcaaaacaacgctttagattggaa 6520337  T
Q  141 gggaggctaaggtaactcattctca 165  Q
    |||||  || ||||||||| |||||    
T  6520336 gggagattatggtaactcaatctca 6520312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 7587590 - 7587754
Alignment:
Q  1 ccaattcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    |||| ||||||||| ||||| || || | ||||  || ||||||||||||| ||||||||||||||| ||| |||| ||||||||  |||||||||||||    
T  7587590 ccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatacataacccttggg 7587689  T
Q  101 aaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctca 165  Q
    |||||| ||| || | ||||||||| |||| |||||||| |||||  || ||||||||| |||||    
T  7587690 aaatattgaacaaaaggcaaaacaacgctttagattggatgggagattatggtaactcaatctca 7587754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 6722340 - 6722145
Alignment:
Q  41 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa 140  Q
    |||| ||||||||||||||||||| |||| | ||   || ||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||| ||||    
T  6722340 caaatcttctgtcatccaaagcttaattagttcactcttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagatcggaa 6722241  T
Q  141 gggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatcttaacccattca 239  Q
    |||||| ||| | |||||| ||| || ||||  | | |||   || | |||||||  | ||||| || |||||||||||||||||||| | ||||||||    
T  6722240 gggaggttaaagaaactcaatcttagtacggggttaatgt---tgttctcaccctctgataaacaccacaaatcagtctccaatatctgatcccattca 6722145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 8471317 - 8471443
Alignment:
Q  39 agcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattgg 138  Q
    ||||||||||||| ||||||||||||||| ||| ||||  | ||||||||| ||||||| |||||||||||  | || ||||||||  |||||||||| |    
T  8471317 agcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccttaggaaatatagagcagtaggcaaaacagcgcttcagattag 8471416  T
Q  139 aagggaggctaaggtaactcattctca 165  Q
    |||||||| || ||||||||| |||||    
T  8471417 aagggaggttatggtaactcaatctca 8471443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 8589485 - 8589612
Alignment:
Q  42 aaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaag 141  Q
    |||||||||| |||||| |||||||| ||| || | |||||||| ||||||||||||||||| || ||| |||| | ||| |||||||| ||| ||||||    
T  8589485 aaaccttctgccatccagagcttgatcaattcacctttttcaaattcataacccttgggaaaaatggaacaataagaaaagcaatgctttagaatggaag 8589584  T
Q  142 ggaggctaaggtaactcattctcagaac 169  Q
    ||||  || ||||||| | |||||||||    
T  8589585 ggagattatggtaacttaatctcagaac 8589612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 6947024 - 6947125
Alignment:
Q  41 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa 140  Q
    ||||||||||| ||||||||||||||| ||| |||| ||||||||   ||||||||||||||| || ||  |||| ||||||||| ||||| ||||||||    
T  6947024 caaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttgggaaaaatggagcaataggcaaaacaacgcttccgattggaa 6947123  T
Q  141 gg 142  Q
    ||    
T  6947124 gg 6947125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 6839180 - 6839054
Alignment:
Q  39 agcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattgg 138  Q
    ||||||||||||| ||||||||||||||| ||| ||||  | ||||||||| ||||| | ||||||| |||| | || ||||||||  | |||| | |||    
T  6839180 agcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaaacccctaggaaatacagaacagtaggcaaaacagcgtttcaaactgg 6839081  T
Q  139 aagggaggctaaggtaactcattctca 165  Q
    |||||||| || ||||||||| |||||    
T  6839080 aagggaggttatggtaactcaatctca 6839054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 6554723 - 6554516
Alignment:
Q  30 caaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgct 129  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||| | || ||||||||   ||| |||||||| || || ||| |||| ||||| ||| |||    
T  6554723 caacacttcagcaaaccttctgccatccaaagcttgatcaatacttctttttcaaatctatagcccttggggaaaatggaacaatacgcaaagcaacgct 6554624  T
Q  130 tcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatctt 229  Q
    | ||||  ||||||||  || ||||||||| ||| || || || | | ||||| ||  ||| || |  | |||||||| || ||||||||||||||||||    
T  6554623 ttagatccgaagggagattatggtaactcaatcttagtactgagttaatgttg-tg--gtccccatctgataaacgccacatatcagtctccaatatctt 6554527  T
Q  230 aacccattcat 240  Q
    || ||||||||    
T  6554526 aatccattcat 6554516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 8454409 - 8454534
Alignment:
Q  41 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa 140  Q
    ||||||||||| |||||||||| |||| | | |||| |||| ||| | || |||||||||||| || ||| |||| | ||| ||| |||| ||||| |||    
T  8454409 caaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatgacccttgggaaaaatggaacaataggaaaagcaacgctttagattagaa 8454508  T
Q  141 gggaggctaaggtaactcattctcag 166  Q
    |||||  || ||||||||| ||||||    
T  8454509 gggagattatggtaactcaatctcag 8454534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 5267812 - 5268010
Alignment:
Q  39 agcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattgg 138  Q
    |||||||| || | ||||||||| ||||||||| || | || ||||||   |  || ||||||||||  ||| |||| | ||||||  ||||||||||||    
T  5267812 agcaaaccgtcggccatccaaagtttgattaattcacctttgtcaaaccacttgcctttgggaaataaggaacaataagaaaaacagcgcttcagattgg 5267911  T
Q  139 aagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatcttaacccattc 238  Q
    |||||||   | ||||||||| |||||| || |||| | ||||  ||   ||||| |  | |||||||| || ||| |||||||||||||||||||||||    
T  5267912 aagggagatgatggtaactcaatctcagtactgaattaatgttaatg---tcaccttctgataaacgccacatatctgtctccaatatcttaacccattc 5268008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 6480256 - 6480197
Alignment:
Q  41 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttggg 100  Q
    ||||||||||| ||||||||||||||| ||| |||| ||||||||   ||||||||||||    
T  6480256 caaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttggg 6480197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 6735734 - 6735941
Alignment:
Q  30 caaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgct 129  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||| | || |||| |||   |||||||||||| || || ||| |||| ||||| ||| |||    
T  6735734 caacacttcagcaaaccttctgccatccaaagcttgatcaatacttcttttttaaatctataacccttggggaaaatggaacaataggcaaagcaacgct 6735833  T
Q  130 tcagattggaagggaggctaaggtaactcattctcagaacggaataattgttgctgctgtcacccttgggtaaacgccgcaaatcagtctccaatatctt 229  Q
    | ||||  || |||||  || ||||||||| ||| || || || | | ||||| ||  ||| || |  | |||||||| || ||||||||||||||||||    
T  6735834 ttagatctgatgggagattatggtaactcaatcttagtactgagttaatgttg-tg--gtccccatctgataaacgccacatatcagtctccaatatctt 6735930  T
Q  230 aacccattcat 240  Q
    || ||||||||    
T  6735931 aatccattcat 6735941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 6573571 - 6573465
Alignment:
Q  39 agcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattgg 138  Q
    ||||||||||| | ||||||||| ||||| ||| |||| |||||||| | |||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  6573571 agcaaaccttcagccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaaatatggaacaatatgcaaaacaacgctttagattgg 6573472  T
Q  139 aagggag 145  Q
    |||||||    
T  6573471 aagggag 6573465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 7762 - 7626
Alignment:
Q  30 caaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgct 129  Q
    |||| ||| ||||||||||||  ||||||||||||||| ||| | || ||||||||   ||| ||||||||||| || ||| |||| | ||| ||| ||     
T  7762 caacacttcagcaaaccttctcccatccaaagcttgatcaatacttctttttcaaatctatagcccttgggaaaaatggaacaataggaaaagcaacgcc 7663  T
Q  130 tcagattggaagggaggctaaggtaactcattctcag 166  Q
    | ||||  ||||||||  || ||||||||| ||||||    
T  7662 ttagatcagaagggagattatggtaactcaatctcag 7626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University