View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_108 (Length: 250)

Name: NF3223_low_108
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_108
NF3223_low_108
[»] chr3 (5 HSPs)
chr3 (10-102)||(43417199-43417291)
chr3 (103-175)||(2679752-2679824)
chr3 (102-175)||(8324387-8324460)
chr3 (103-175)||(54910748-54910819)
chr3 (101-174)||(542360-542434)
[»] chr1 (7 HSPs)
chr1 (101-175)||(36671927-36672001)
chr1 (101-175)||(46152502-46152576)
chr1 (101-175)||(5799913-5799987)
chr1 (101-175)||(46153559-46153633)
chr1 (102-175)||(39628162-39628235)
chr1 (104-175)||(31210620-31210691)
chr1 (109-175)||(6079926-6079992)
[»] scaffold0059 (1 HSPs)
scaffold0059 (102-175)||(71028-71101)
[»] chr5 (7 HSPs)
chr5 (102-175)||(972149-972222)
chr5 (101-175)||(14721052-14721125)
chr5 (102-175)||(665060-665133)
chr5 (103-175)||(41609086-41609158)
chr5 (106-175)||(14575807-14575876)
chr5 (102-175)||(35777716-35777789)
chr5 (21-70)||(37529484-37529533)
[»] chr7 (8 HSPs)
chr7 (100-175)||(38036449-38036524)
chr7 (102-175)||(31603305-31603378)
chr7 (103-175)||(20883624-20883696)
chr7 (103-175)||(24008995-24009067)
chr7 (101-175)||(968834-968908)
chr7 (101-175)||(15877072-15877144)
chr7 (100-175)||(19503454-19503527)
chr7 (103-175)||(24189384-24189455)
[»] chr4 (11 HSPs)
chr4 (101-175)||(17616741-17616814)
chr4 (102-175)||(1182589-1182662)
chr4 (103-175)||(45953652-45953724)
chr4 (102-175)||(16917218-16917291)
chr4 (101-175)||(34936885-34936957)
chr4 (103-175)||(36187890-36187962)
chr4 (100-175)||(24346834-24346909)
chr4 (100-175)||(40318993-40319067)
chr4 (104-150)||(25814738-25814784)
chr4 (105-175)||(34792215-34792285)
chr4 (103-175)||(30839579-30839650)
[»] scaffold0190 (1 HSPs)
scaffold0190 (102-175)||(6033-6106)
[»] chr2 (7 HSPs)
chr2 (102-175)||(44544044-44544117)
chr2 (103-175)||(13118817-13118889)
chr2 (103-175)||(36023588-36023660)
chr2 (102-175)||(36430947-36431019)
chr2 (103-175)||(325455-325527)
chr2 (102-175)||(3911226-3911299)
chr2 (104-175)||(39307011-39307083)
[»] scaffold0008 (1 HSPs)
scaffold0008 (103-175)||(263160-263231)
[»] chr8 (2 HSPs)
chr8 (102-174)||(9179123-9179195)
chr8 (102-175)||(2164751-2164824)
[»] chr6 (2 HSPs)
chr6 (23-98)||(2915580-2915655)
chr6 (105-175)||(26611473-26611543)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 43417291 - 43417199
Alignment:
Q  10 gcacagacatcttctaccatcacatacaaatgtaacctgtggtcatgtggccctcactaccccacctaacactctctttcatatgggatgaaa 102  Q
    ||||| || ||||||||||  |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  43417291 gcacacacctcttctaccactacatacaaatgtaacacgtggtcatatggccctcactaccccacctaacactctcttttatatgggatgaaa 43417199  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 2679824 - 2679752
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  2679824 ggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 2679752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 8324387 - 8324460
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| ||||||||| || |||||||| |||||||||||| |||||||||||    
T  8324387 aggcaatttctatggtacactcgataattttgagtgtcccggtacacccatgtatttaaatgaatagtttaatg 8324460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 54910748 - 54910819
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||| ||||| || |||||||||||| |||||||||||    
T  54910748 ggcaatttctatggtacactcgataattttgagtgtacc-gtacatccgtgtatttaaatgaatagtttaatg 54910819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 542360 - 542434
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtat-ttaaatggatagtttaat 174  Q
    |||||||||||||||||| | || ||||  ||||||||||| |||||||| | ||| ||||||| ||||||||||    
T  542360 aaggcaatttctatggtacactcaataaaattgagtgtaccggtacacccatatatgttaaatgaatagtttaat 542434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 36671927 - 36672001
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  36671927 aaggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 36672001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 46152576 - 46152502
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  46152576 aaggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 46152502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 5799913 - 5799987
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| | ||||||| |||||||||| | |||||||| |||||||||||| |||||||||||    
T  5799913 aaggcaatttctatggtacactcgataattttgagtgtatcggtacacccgtgtatttaaatgaatagtttaatg 5799987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 46153633 - 46153559
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||| ||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  46153633 aaggcaatttttatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 46153559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 39628235 - 39628162
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| ||| |||||| | |||||||| |||||||||||| |||||||||||    
T  39628235 aggcaatttctatggtacactcgataattttaagtgtatcggtacacccgtgtatttaaatgaatagtttaatg 39628162  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 31210620 - 31210691
Alignment:
Q  104 gcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||| ||| ||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  31210620 gcaatttttatagtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 31210691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 6079992 - 6079926
Alignment:
Q  109 ttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||| | || |||| ||| ||||| || |||||||| |||||||||||| |||||||||||    
T  6079992 ttctatggtacactcaataattttaagtgtcccggtacacccgtgtatttaaatgaatagtttaatg 6079926  T

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Target: scaffold0059 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 71101 - 71028
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  71101 aggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 71028  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 972149 - 972222
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  972149 aggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 14721052 - 14721125
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  14721052 aaggcaatttctatggtacactcgataattttgagtgtacc-gtacacccgtgtatttaaatgaatagtttaatg 14721125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 665133 - 665060
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||| | | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  665133 aggcaatttctatggcacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 665060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 41609086 - 41609158
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||  |||||||||||    
T  41609086 ggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaataaatagtttaatg 41609158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 14575876 - 14575807
Alignment:
Q  106 aatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||| | ||||||| |||||||||| | |||||||  |||||||||||| |||||||||||    
T  14575876 aatttctatggtacactcgataattttgagtgtatcggtacacctgtgtatttaaatgaatagtttaatg 14575807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 35777789 - 35777716
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||| |||| | ||||||| |||||||||||  ||||| || | |||||||||| ||| |||||||    
T  35777789 aggcaatttctacggtacactcgataattttgagtgtactggtacatccgtctatttaaatgaatactttaatg 35777716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 37529533 - 37529484
Alignment:
Q  21 ttctaccatcacatacaaatgtaacctgtggtcatgtggccctcactacc 70  Q
    |||||||| |||||| |||||| || |||||||||||| |||||||||||    
T  37529533 ttctaccaccacatataaatgtgacatgtggtcatgtgaccctcactacc 37529484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 38036524 - 38036449
Alignment:
Q  100 aaaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||||| | ||||||| ||||||||||||  ||||||| |||||||||||| |||||||||||    
T  38036524 aaaggcaatttctatggtacactcgataattttgagtgtaccgatacacccgtgtatttaaatgaatagtttaatg 38036449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 31603305 - 31603378
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| ||||||||||||  ||||||| |||||||||||| |||||||||||    
T  31603305 aggcaatttctatggtacactcgataattttgagtgtaccgatacacccgtgtatttaaatgaatagtttaatg 31603378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 20883624 - 20883696
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| || ||||||||| |||||||| |||||||||||| |||||||||||    
T  20883624 ggcaatttctatggtacactcgataatttggagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 20883696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 24008995 - 24009067
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| ||| |||||||    
T  24008995 ggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaatgaataatttaatg 24009067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 968908 - 968834
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| | ||||||| ||||| ||||||  ||||||| |||||||||||| |||||||||||    
T  968908 aaggcaatttctatggtacactcgataattttgaatgtaccgatacacccgtgtatttaaatgaatagtttaatg 968834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 15877072 - 15877144
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| |||||| || |||||||||||| |||||||  | |||||||||  |||||||||||    
T  15877072 aaggcaatttctatggtacattcgaaaaatttgagtgtaccggtacacc--tatatttaaattaatagtttaatg 15877144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 19503527 - 19503454
Alignment:
Q  100 aaaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||| |||||||||||||| | |||| ||||||||||||| | |||||||  | |||||||||  |||||||||||    
T  19503527 aaagacaatttctatggtacactcgaaaagtttgagtgtatcggtacacc--tatatttaaattaatagtttaatg 19503454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 24189455 - 24189384
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||| |||  | ||||||| |||||||||||  |||||||| |||||||||||| ||| |||||||    
T  24189455 ggcaatttctacggttcactcgataattttgagtgtacg-gtacacccgtgtatttaaatgaatactttaatg 24189384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 17616814 - 17616741
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  17616814 aaggcaatttctatggtacactcgataattttgagtgtacc-gtacacccgtgtatttaaatgaatagtttaatg 17616741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 1182589 - 1182662
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| |||||||||||| ||||| || |||||||||||| |||||||||||    
T  1182589 aggcaatttctatggtacactcgataattttgagtgtaccggtacatccgtgtatttaaatgaatagtttaatg 1182662  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 45953652 - 45953724
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| ||||||||||||  ||||||| |||||||||||| |||||||||||    
T  45953652 ggcaatttctatggtacactcgataattttgagtgtaccgatacacccgtgtatttaaatgaatagtttaatg 45953724  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 16917218 - 16917291
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | || |||| |||||||||||  |||||||| | |||||||||| |||||||||||    
T  16917218 aggcaatttctatggtacactcaataattttgagtgtactggtacacccgtatatttaaatgaatagtttaatg 16917291  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 34936957 - 34936885
Alignment:
Q  101 aaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||| ||||||| |||||| || ||||||||||||||||||||  | |||||||||  |||||||||||    
T  34936957 aaggcaatttttatggtacattcgaaaaatttgagtgtacctgtacacc--tatatttaaattaatagtttaatg 34936885  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 36187890 - 36187962
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||| |||||||   || |||| |||||||||| | |||||||| |||||||||||| |||||||||||    
T  36187890 ggcaatttttatggtactctcaataattttgagtgtatcagtacacccgtgtatttaaatgaatagtttaatg 36187962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 24346834 - 24346909
Alignment:
Q  100 aaaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||||| | | ||||| |||||  ||| | |||||||| |||||||||||| |||| ||||||    
T  24346834 aaaggcaatttctatggtacacttgataattttgatcgtatcggtacacccgtgtatttaaatgaatagcttaatg 24346909  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 40318993 - 40319067
Alignment:
Q  100 aaaggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||||| |||| ||||  ||||||||||  |||||||| | || ||||||| |||||||||||    
T  40318993 aaaggcaatttctatggtacattcaataaaattgagtgtactggtacacccatata-ttaaatgaatagtttaatg 40319067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 25814784 - 25814738
Alignment:
Q  104 gcaatttctatggtagattcgataagtttgagtgtacctgtacaccc 150  Q
    ||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  25814784 gcaatttctatggtacattcgataaaattgagtgtaccggtacaccc 25814738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 34792285 - 34792215
Alignment:
Q  105 caatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||| || ||||||||| ||||| ||||||  ||||||  |||||||||||| |||| ||||||    
T  34792285 caatttctatgatacattcgataattttgattgtaccgatacacctgtgtatttaaatgaatagcttaatg 34792215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 30839650 - 30839579
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | || |||| |||||||||||| |||||||| | |  ||||||| |||||||||||    
T  30839650 ggcaatttctatggtacactcaataaatttgagtgtaccggtacacccatat-gttaaatgaatagtttaatg 30839579  T

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Target: scaffold0190 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 6106 - 6033
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| |||||||||||| |||||||||| |||||||||| ||| |||||||    
T  6106 aggcaatttctatggtacactcgataattttgagtgtaccggtacacccttatatttaaatgaataatttaatg 6033  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 44544044 - 44544117
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| |||||||||||| |||||||  |||||||||||| |||||||||||    
T  44544044 aggcaatttctatggtacactcgataattttgagtgtaccggtacaccagtgtatttaaatgaatagtttaatg 44544117  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 13118817 - 13118889
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||| ||||| || |||||||||||| |||||||||||    
T  13118817 ggcaatttctatggtacactcgataattttgagtgtaccggtacatccgtgtatttaaatgaatagtttaatg 13118889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 36023588 - 36023660
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | || |||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  36023588 ggcaatttctatggtacactcaataattttgagtgtaccggtacacccgtgtatttaaatgaatagtttaatg 36023660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 36431019 - 36430947
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | ||||||| |||||||||||| ||| |||| |||||||||||| |||||||||||    
T  36431019 aggcaatttctatggtacactcgataattttgagtgtacc-gtatacccgtgtatttaaatgaatagtttaatg 36430947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 325455 - 325527
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||  |||||||| ||| |||||||| |||||||||||    
T  325455 ggcaatttctatggtacactcgataattttgagtgtactggtacacccgtgtttttaaatgaatagtttaatg 325527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 3911226 - 3911299
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||  ||| | ||||||| |||||||||||| ||||| || |||||||||||| ||| |||||||    
T  3911226 aggcaatttctaccgtacactcgataattttgagtgtaccggtacatccgtgtatttaaatgaatactttaatg 3911299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 39307011 - 39307083
Alignment:
Q  104 gcaatttctatggtagattc-gataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||| | || ||||| ||||||||||||  ||||||| ||| |||||||| |||||||||||    
T  39307011 gcaatttctatggtacactcagataattttgagtgtaccgatacacccgtgtctttaaatgaatagtttaatg 39307083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 263231 - 263160
Alignment:
Q  103 ggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  263231 ggcaatttctatggtacactcgataattttgagtgtacc-gtacacccgtgtatttaaatgaatagtttaatg 263160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 9179195 - 9179123
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaat 174  Q
    ||||||||||||||||| | ||||||| |||||||||| | |||||||| |||||||||||| ||||||||||    
T  9179195 aggcaatttctatggtacactcgataattttgagtgtaacggtacacccgtgtatttaaatgaatagtttaat 9179123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 2164751 - 2164824
Alignment:
Q  102 aggcaatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    ||||||||||||||||| | || |||| |||||||||||| ||||| || |||||||||||| |||||||||||    
T  2164751 aggcaatttctatggtacactcaataattttgagtgtaccggtacatccgtgtatttaaatgaatagtttaatg 2164824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 2915580 - 2915655
Alignment:
Q  23 ctaccatcacatacaaatgtaacctgtggtcatgtggccctcactaccccacctaacactctctttcatatgggat 98  Q
    |||||| ||||||||||||| || ||||  ||||||||||||||  | ||||||||||||||||||||||| ||||    
T  2915580 ctaccaccacatacaaatgtgacatgtgaacatgtggccctcaccgctccacctaacactctctttcatatcggat 2915655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 26611473 - 26611543
Alignment:
Q  105 caatttctatggtagattcgataagtttgagtgtacctgtacacccttgtatttaaatggatagtttaatg 175  Q
    |||||||||||||| | ||||||| ||||| |||||| |||||||| | |||||||||| |||| ||||||    
T  26611473 caatttctatggtacactcgataattttgattgtaccagtacacccgtatatttaaatgaatagcttaatg 26611543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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