View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_109 (Length: 250)
Name: NF3223_low_109
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_109 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 35972372 - 35972611
Alignment:
| Q |
11 |
cacagagagaaggttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaa |
110 |
Q |
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| T |
35972372 |
cacagagagaaggttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaa |
35972471 |
T |
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| Q |
111 |
atttcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatt |
210 |
Q |
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| T |
35972472 |
atttcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcattcagtttttt |
35972571 |
T |
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| Q |
211 |
tttctttcattcataagaatcacaaacaactttggcctct |
250 |
Q |
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| T |
35972572 |
tttctttcattcataagaatcacaaacaactttggcctct |
35972611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 35952419 - 35952654
Alignment:
| Q |
11 |
cacagagagaaggttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaa |
110 |
Q |
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| T |
35952419 |
cacagagagaaggttattccaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaa |
35952518 |
T |
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| Q |
111 |
atttcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatt |
210 |
Q |
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| T |
35952519 |
atttcatggaaaggcatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatt |
35952618 |
T |
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| Q |
211 |
tttctttcattcataagaatcacaaacaactttggc |
246 |
Q |
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| T |
35952619 |
tttctttcattcataagaatcagaaacaactttggc |
35952654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 35979567 - 35979742
Alignment:
| Q |
56 |
ctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattga |
155 |
Q |
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| T |
35979567 |
ctggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatga |
35979666 |
T |
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| Q |
156 |
tgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatc |
231 |
Q |
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| T |
35979667 |
tgctgcaaagattgcttacaaggccttaaaagatggtaagtttattcacttgattttgctttcatgcataagaatc |
35979742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 35956469 - 35956658
Alignment:
| Q |
14 |
agagagaaggttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatt |
113 |
Q |
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| T |
35956469 |
agagagaaggtttttccaaaccaacatataaaactacacaaattggtcctcctcatatgccaacttttttctcaactgtggaagtagagggcatcggatt |
35956568 |
T |
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| Q |
114 |
tcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttca |
203 |
Q |
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| T |
35956569 |
tcatggaaaggcatctaaatccaaaaacaaggcagaagaagatgccgcaaagattgcttacatcaccttaaaagagtgtaagttcattca |
35956658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 35969408 - 35969585
Alignment:
| Q |
11 |
cacagagagaaggttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaa |
110 |
Q |
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|||||| | |||||| ||||||||| ||||||| |||||| || ||||||| | |||||||||||||| || |||| |||| ||||||||||| || | |
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| T |
35969408 |
cacagaaaaaaggtttttccaaaccaacatataaaactacacagactggttcccttcatatgccaacttttttctcagctgttgaagtagagggtgtgga |
35969507 |
T |
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| Q |
111 |
atttcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaaga |
188 |
Q |
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| T |
35969508 |
gtttcatggaaatgcatctagatccaaaaaagaggcagaacgtgatgctgcaaagattgcttacaaggccataaaaga |
35969585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 35974469 - 35974542
Alignment:
| Q |
125 |
catctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttc |
198 |
Q |
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| T |
35974469 |
catctagatccataaaagaggcagaacatgatgctgaaaagattgcttacattaccttaaaagagtgtaagttc |
35974542 |
T |
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