View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_111 (Length: 250)
Name: NF3223_low_111
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_111 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 24168048 - 24168287
Alignment:
| Q |
10 |
aagaatatcaaacttagaagtgtgtggtgctaaactgttaatctaaactcgtacatttgagcaacaagggaagtcagtcatgttatccaaattatacctc |
109 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24168048 |
aagaaaatcaaacttaca-gtgtgtggtgctaaactgttaatctaaactcatacatttgagcaacaagggaagtcagtcatgttatccaaattatacctc |
24168146 |
T |
|
| Q |
110 |
aagttgtttctgttgagtattgattacttcagcatatttggcagaataattgacattttgtcgaacactgtcacgttttccaccacaactgcagaatttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24168147 |
aagttgtttctgttgagtattgattacttcagcatatttggcagaataattgacattttgtcgaacactgtcacgttttccaccacaactgcagaatttg |
24168246 |
T |
|
| Q |
210 |
gagaaatcatttgatgccaaactacttctttgattaagata |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24168247 |
gagaaatcatttgatgccaaactacttctttgattaagata |
24168287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 42236193 - 42236341
Alignment:
| Q |
102 |
tatacctcaagttgtttctgttgagtattgattacttcagcatatttggcagaataattgacattttgtcgaacactgtcacgttttccaccacaactgc |
201 |
Q |
| |
|
|||||||||||||||||||| |||| || |||| |||||| | |||||| |||||||| ||||| || || ||| ||||||||||| |||||| ||| |
|
|
| T |
42236193 |
tatacctcaagttgtttctgctgagcatcaattatttcagcctgtttggctgaataattaacattatgctgagtactctcacgttttcccccacaagtgc |
42236292 |
T |
|
| Q |
202 |
agaatttggagaaatcatttgatgccaaactacttctttgattaagata |
250 |
Q |
| |
|
||||||| || ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
42236293 |
agaatttagataaatcatttgacgtcaaactacttctttgattaagata |
42236341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University