View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_112 (Length: 249)
Name: NF3223_low_112
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 55181339 - 55181210
Alignment:
| Q |
34 |
ttcaattgtttgaattattttacaataaaataaaatagaggaaaagacttggtctttctcattctcatgatatacaaaatgaaaagaagnnnnnnngttt |
133 |
Q |
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| T |
55181339 |
ttcaattgtttgaattattttacaataaaataaaatagaggaaaagacttggtctttctcattctcatgatatacaaaatgaaaggaagaaaaaaagttt |
55181240 |
T |
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| Q |
134 |
agtattagacggaatgaaatgcaattcctt |
163 |
Q |
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| T |
55181239 |
agtattagacggaatcaaatgcaattcctt |
55181210 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 55181130 - 55181060
Alignment:
| Q |
179 |
taacttggattaatctattgttggtcaattgcttatccaattcaacttaaacaatataatctttaattcca |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55181130 |
taacttggattaatctattgttggtcaattgcttatcaaattcaacttaaacaatataatctttaattcca |
55181060 |
T |
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