View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_117 (Length: 247)

Name: NF3223_low_117
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_117
NF3223_low_117
[»] chr1 (3 HSPs)
chr1 (154-245)||(47820668-47820759)
chr1 (165-245)||(41318905-41318985)
chr1 (34-80)||(41318782-41318828)
[»] chr8 (2 HSPs)
chr8 (188-230)||(18604411-18604453)
chr8 (38-84)||(18604257-18604303)
[»] chr7 (2 HSPs)
chr7 (188-230)||(42561275-42561317)
chr7 (38-84)||(42561425-42561471)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 47820668 - 47820759
Alignment:
Q  154 cactcatgtattagtcaattggttcagacatcacataaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcg 245  Q
    |||||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  47820668 cactcacgtattagtcaattggttcaggcaccgcataaatggaaaacaaaaggataaaaatgcaaaagtagtgatatattttatctctctcg 47820759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 41318905 - 41318985
Alignment:
Q  165 tagtcaattggttcagacatcacataaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcg 245  Q
    ||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41318905 tagtcgattggtacaggcaccacataaatggaaaacaaaaggataaaaatggaaaagtagtgatatttttcttctctctcg 41318985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 41318782 - 41318828
Alignment:
Q  34 tttgttttaattcaactttactgatttgaaatgataataaccagtgc 80  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  41318782 tttgttttaattcatctttactgatttgaaatgataataacaagtgc 41318828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 18604411 - 18604453
Alignment:
Q  188 ataaatggaaaacaaaaggataaaaatggaaaagtagtgatat 230  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  18604411 ataaattgaaaacaaaaggctaaaaatggaaaagtagtgatat 18604453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 18604257 - 18604303
Alignment:
Q  38 ttttaattcaactttactgatttgaaatgataataaccagtgcttat 84  Q
    ||||||||||||||||||||||| |||||| |||||| || ||||||    
T  18604257 ttttaattcaactttactgatttaaaatgacaataactagggcttat 18604303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 42561317 - 42561275
Alignment:
Q  188 ataaatggaaaacaaaaggataaaaatggaaaagtagtgatat 230  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  42561317 ataaattgaaaacaaaaggctaaaaattgaaaagtagtgatat 42561275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 42561471 - 42561425
Alignment:
Q  38 ttttaattcaactttactgatttgaaatgataataaccagtgcttat 84  Q
    ||||||||||||||||||||||| |||||| |||||| || ||||||    
T  42561471 ttttaattcaactttactgatttaaaatgacaataactagggcttat 42561425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University