View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_119 (Length: 246)
Name: NF3223_low_119
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_119 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 49041081 - 49041309
Alignment:
| Q |
18 |
caagtcgcgcacggccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcc |
117 |
Q |
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| T |
49041081 |
caagtcacgcacggccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaacccggccctttgcc |
49041180 |
T |
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| Q |
118 |
tcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaa |
217 |
Q |
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| T |
49041181 |
tcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaa |
49041280 |
T |
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| Q |
218 |
gattcttctgcaactcatcaagaacagct |
246 |
Q |
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| T |
49041281 |
gattcttctgcaactcatcaagaacagct |
49041309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 49040316 - 49040232
Alignment:
| Q |
35 |
tccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctc |
119 |
Q |
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| T |
49040316 |
tccatacggcactgttacatttaaaacctgccccaaatgcaatctgccacaccctatccccctttgaaactctacccttggcctc |
49040232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 15239692 - 15239495
Alignment:
| Q |
49 |
ttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccatagagaac |
148 |
Q |
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| T |
15239692 |
ttacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaac |
15239593 |
T |
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| Q |
149 |
tgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcatcaagaacagct |
246 |
Q |
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| T |
15239592 |
tactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaagatttttctccaactcatccaaaacagct |
15239495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 34053404 - 34053214
Alignment:
| Q |
36 |
ccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttca |
135 |
Q |
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| T |
34053404 |
ccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattca |
34053305 |
T |
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| Q |
136 |
taccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttct |
226 |
Q |
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| T |
34053304 |
taccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgccaatcactaaggtcaagatttttct |
34053214 |
T |
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