View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_12 (Length: 527)
Name: NF3223_low_12
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 43051188 - 43051700
Alignment:
| Q |
1 |
agtaaatagagagagtagttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051188 |
agtaaatagagagagtagttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcaccca |
43051287 |
T |
|
| Q |
101 |
tcatccaattccattccaacccttatttaaaaacaatatttgaaggtcacaatca-----cattacattacaacaacactaaacaacaagaagaaaaaag |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43051288 |
tcatccaattccattccaacccttatttaaaaacaatatttgaaggtcacaatcatattacattacattacaacaacactacacaacaagaagaaaaaag |
43051387 |
T |
|
| Q |
196 |
gaacaaattttgaaggacaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgcca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43051388 |
gaacaaattttgaaggacaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacaccacctatctgccgctgcca |
43051487 |
T |
|
| Q |
296 |
tcattggccatgatggctctgtttgggctcagagctcttccttccctcaggtatattcatcattacattcccacatgaaactattcttggtcattcattg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051488 |
tcattggccatgatggctctgtttgggctcagagctcttccttccctcaggtatattcatcattacattcccacatgaaactattcttggtcattcattg |
43051587 |
T |
|
| Q |
396 |
cgtatttgaagattagattttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatcaatttttatttatgattatttttcagat |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051588 |
cgtatttgaagattagattttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatcaatttttatttatgattatttttcagat |
43051687 |
T |
|
| Q |
496 |
taagcctcaagag |
508 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43051688 |
taagcctcaagag |
43051700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 34173974 - 34173838
Alignment:
| Q |
212 |
acaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgccatcattggccatgatgg |
311 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || |||||||| | || |||||||| | |||||||| || |
|
|
| T |
34173974 |
acaaaatgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggtcatcacctcaccgcggctgccattctcggccatgacgg |
34173875 |
T |
|
| Q |
312 |
ctctgtttgggctcagagctcttccttccctcaggta |
348 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |
|
|
| T |
34173874 |
ttctgtttgggctcagagcacttcattccctcaggta |
34173838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University